Miyakogusa Predicted Gene

Lj1g3v2546300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KY88_MEDTR 604 73.6 77.2 (tr|G7KY88) RING finger protein OS=Medicago truncatula GN=MTR_7g074140 PE=4 SV=1
TAIR_pep AT5G01960.1 546 62.6 69.3 | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426
Medicago Medtr7g074140.1 604 73.6 77.2 | zinc finger, C3HC4 type (RING finger) protein | HC | chr7:27693298-27698469 | 20130731
Soybean Glyma18g45010.1 587 72.8 76.8  
LJGI gnl|LJGI|FS337312 448 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2546300.1 length: 444 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 2.4e-12 382-422
HMMSmart SM00184 Ring 1.7e-07 383-420
ProfileScan PS50089 ZF_RING_2 13.596 383-421
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 7.9e-17 381-431
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 398-407
no_ID  
HMMPanther PTHR15860 UNCHARACTERIZED 1.7e-126 139-444
HMMPanther PTHR15860:SF0 SUBFAMILY 1.7e-126 139-444
Seg seg seg NA 14-27
117-146
165-176
298-316
superfamily SSF57850 RING/U-box 6.4e-18 376-444
Putative transmembrane regions
  From To
TM segments
SOSUI		 31 53
169 191
213 231
261 282
297 319
Wolf-PSORT
Lj1g3v2546300.1	cyto 9, nucl 3, chlo 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2546300.1