Miyakogusa Predicted Gene

Lj1g3v2156570.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LT34_SOYBN 462 92.5 96.2 (tr|I1LT34) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT1G53000.1 444 86.2 95.0 | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290

Medicago Medtr1g057850.1 455 88.3 95.8 | 3-deoxy-manno-octulosonate cytidylyltransferase | HC | chr1:25449538-25456814 | 20130731

Soybean Glyma12g23350.1 462 92.5 96.2

LJGI gnl|LJGI|TC61490 1187 95.0 95.0 homologue to UniRef100_A7P1L5 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v2156570.1 length: 289 aa.

IPR003329 Acylneuraminate cytidylyltransferase

method AccNumber shortName E-value location

Biological Process GO:0009103 lipopolysaccharide biosynthetic process

HMMPfam PF02348 CTP_transf_3 9.5e-55 46-255

IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase

Cellular Component GO:0005737 cytoplasm

Molecular Function GO:0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity

Biological Process GO:0009103 lipopolysaccharide biosynthetic process

HAMAP MF_00057 CMP_KDO_synth 36.193 42-284

HMMPanther PTHR21485:SF4 CMP-2-KETO-3-DEOCTULOSONATE 2.2e-118 34-288

HMMTigr TIGR00466 kdsB: 3.3e-67 46-277

no_ID

Gene3D G3DSA:3.90.550.10 no description 3.7e-74 43-286

HMMPanther PTHR21485 CMP-N-ACETYLNEURAMINIC 2.2e-118 34-288

Seg seg seg NA 5-15
26-50

superfamily SSF53448 Nucleotide-diphospho-sugar 5.7e-56 43-283

Putative transmembrane regions

From To

TM segments
SOSUI 28 50

Wolf-PSORT

Lj1g3v2156570.1 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v2156570.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LT34_SOYBN	462	92.5	96.2	(tr\|I1LT34) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT1G53000.1	444	86.2	95.0	\| Symbols: KDSB \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr1:19745330-19747133 REVERSE LENGTH=290
Medicago	Medtr1g057850.1	455	88.3	95.8	\| 3-deoxy-manno-octulosonate cytidylyltransferase \| HC \| chr1:25449538-25456814 \| 20130731
Soybean	Glyma12g23350.1	462	92.5	96.2
LJGI	gnl\|LJGI\|TC61490	1187	95.0	95.0	homologue to UniRef100_A7P1L5 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)

IPR003329	Acylneuraminate cytidylyltransferase
Lj1g3v2156570.1				length: 289 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0009103	lipopolysaccharide biosynthetic process
HMMPfam	PF02348	CTP_transf_3	9.5e-55	46-255
IPR004528	3-deoxy-D-manno-octulosonate cytidylyltransferase
Cellular Component	GO:0005737	cytoplasm
Molecular Function	GO:0008690	3-deoxy-manno-octulosonate cytidylyltransferase activity
Biological Process	GO:0009103	lipopolysaccharide biosynthetic process
HAMAP	MF_00057	CMP_KDO_synth	36.193	42-284
HMMPanther	PTHR21485:SF4	CMP-2-KETO-3-DEOCTULOSONATE	2.2e-118	34-288
HMMTigr	TIGR00466	kdsB:	3.3e-67	46-277
no_ID
Gene3D	G3DSA:3.90.550.10	no description	3.7e-74	43-286
HMMPanther	PTHR21485	CMP-N-ACETYLNEURAMINIC	2.2e-118	34-288
Seg	seg	seg	NA	5-15 26-50
superfamily	SSF53448	Nucleotide-diphospho-sugar	5.7e-56	43-283