Miyakogusa Predicted Gene

Lj1g3v1788440.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S499_LOTJA 1053 96.6 96.6 (tr|I3S499) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G26270.1 473 55.3 71.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11184739-11187659 FORWARD LENGTH=470

Medicago Medtr3g105400.2 863 80.6 86.3 | BRCT domain DNA repair protein | HC | chr3:48606997-48602243 | 20130731

Soybean Glyma06g06070.1 892 83.3 88.3

LJGI gnl|LJGI|TC82457 1861 99.9 99.9 similar to UniRef100_A7P4W0 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (54%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v1788440.2 length: 529 aa.

IPR001357 BRCT domain

method AccNumber shortName E-value location

Gene3D G3DSA:3.40.50.10190 no description 6.5e-19 43-134

HMMPfam PF12738 PTCB-BRCT 2e-12 50-104

HMMSmart SM00292 breast 22 44-124
184-260

ProfileScan PS50172 BRCT 8.527 42-134
182-262

superfamily SSF52113 BRCT 0.00046 40-135
184-263

no_ID

HMMPanther PTHR13561 DNA 1.3e-39 46-487

HMMPanther PTHR13561:SF8 SUBFAMILY 1.3e-39 46-487

Seg seg seg NA 32-46

Wolf-PSORT

Lj1g3v1788440.2 nucl 6, cyto 4, cysk_nucl 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v1788440.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S499_LOTJA	1053	96.6	96.6	(tr\|I3S499) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G26270.1	473	55.3	71.1	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:11184739-11187659 FORWARD LENGTH=470
Medicago	Medtr3g105400.2	863	80.6	86.3	\| BRCT domain DNA repair protein \| HC \| chr3:48606997-48602243 \| 20130731
Soybean	Glyma06g06070.1	892	83.3	88.3
LJGI	gnl\|LJGI\|TC82457	1861	99.9	99.9	similar to UniRef100_A7P4W0 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (54%)

IPR001357	BRCT domain
Lj1g3v1788440.2				length: 529 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:3.40.50.10190	no description	6.5e-19	43-134
HMMPfam	PF12738	PTCB-BRCT	2e-12	50-104
HMMSmart	SM00292	breast	22	44-124 184-260
ProfileScan	PS50172	BRCT	8.527	42-134 182-262
superfamily	SSF52113	BRCT	0.00046	40-135 184-263
no_ID
HMMPanther	PTHR13561	DNA	1.3e-39	46-487
HMMPanther	PTHR13561:SF8	SUBFAMILY	1.3e-39	46-487
Seg	seg	seg	NA	32-46