Miyakogusa Predicted Gene

Lj1g3v1788430.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KIB7_SOYBN 2362 71.5 82.0 (tr|K7KIB7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G43920.2 1306 44.6 61.0 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:15753548-15760830 FORWARD LENGTH=1580
Medicago Medtr3g105390.1 2299 68.9 78.8 | endoribonuclease dicer-like protein | HC | chr3:48587251-48600607 | 20130731
Soybean Glyma04g06060.1 1976 65.2 75.1  
LJGI gnl|LJGI|DC598262 1003 99.2 99.2 weakly similar to UniRef100_Q1KL58 Cluster: Dicer-like 2 spliceform 1; n=1; Arabidopsis thaliana|Rep: Dicer-like 2 spliceform 1 - Arabidopsis thaliana (Mouse-ear cress), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1788430.1 length: 1668 aa.
IPR000999 Ribonuclease III domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004525 ribonuclease III activity    
Biological Process GO:0006396 RNA processing    
Gene3D G3DSA:1.10.1520.10 no description 2.8e-43 1164-1211
1237-1402
HMMPfam PF00636 Ribonuclease_3 1.5e-21 1062-1194
1274-1382
HMMSmart SM00535 Ribonuclease 8.4e-34 1044-1217
1253-1406
PatternScan PS00517 RNASE_3_1 NA 1274-1282
ProfileScan PS50142 RNASE_3_2 34.636 1025-1197
1238-1383
superfamily SSF69065 RNase 2.4e-32 1234-1411
1015-1215
IPR001159 Double-stranded RNA-binding
Molecular Function GO:0003725 double-stranded RNA binding    
ProfileScan PS50137 DS_RBD 8.834 1454-1477
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 3e-16 442-499
HMMSmart SM00490 helicase 1.4e-15 408-503
ProfileScan PS51194 HELICASE_CTER 14.034 393-541
IPR003100 Argonaute/Dicer protein, PAZ
Molecular Function GO:0005515 protein binding    
HMMPfam PF02170 PAZ 1.5e-14 870-1021
HMMSmart SM00949 no description 1e-06 865-1024
ProfileScan PS50821 PAZ 19.426 888-1000
superfamily SSF101690 PAZ 1.6e-14 886-1003
IPR005034 Dicer double-stranded RNA-binding fold
Molecular Function GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters    
HMMPfam PF03368 dsRNA_bind 2e-24 571-658
ProfileScan PS51327 DICER_DSRBF 26.708 570-660
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.4e-16 38-197
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 6.7e-24 32-230
ProfileScan PS51192 HELICASE_ATP_BIND_1 20.846 43-217
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.8e-41 82-525
no_ID  
Gene3D G3DSA:2.170.260.10 no description 6.7e-10 887-1000
Gene3D G3DSA:3.40.50.300 no description 1.6e-23 34-198
381-520
HMMPanther PTHR14950 HELICASE-RELATED 0 1-1499
HMMPanther PTHR14950:SF1 HELICASE-RELATED 0 1-1499
Seg seg seg NA 985-993
1035-1050
1326-1338
superfamily SSF54768 dsRNA-binding 0.0016 1364-1509
1560-1666
Wolf-PSORT
Lj1g3v1788430.1	nucl 3.5, plas 3, E.R. 3, E.R._plas 3, cysk_nucl 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1788430.1