Miyakogusa Predicted Gene

Lj1g3v1387030.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q5NT70_SOYBN 780 73.4 79.6 (tr|Q5NT70) Calnexin OS=Glycine max GN=Gm cnx-1 PE=2 SV=1
TAIR_pep AT5G61790.1 700 64.4 76.2 | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827394-24829642 REVERSE LENGTH=530
Medicago Medtr3g098430.1 755 74.8 79.7 | Calnexin 2 | HC | chr3:44945538-44942010 | 20130731
Soybean Glyma04g38000.2 787 75.4 81.3  
LJGI gnl|LJGI|TC61330 1735 99.9 99.9 similar to UniRef100_Q39817 Cluster: Calnexin homolog precursor; n=1; Glycine max|Rep: Calnexin homolog precursor - Glycine max (Soybean), partial (45%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1387030.1 length: 545 aa.
IPR001580 Calreticulin/calnexin
method AccNumber shortName E-value location
Molecular Function GO:0005509 calcium ion binding    
Cellular Component GO:0005783 endoplasmic reticulum    
Biological Process GO:0006457 protein folding    
Molecular Function GO:0051082 unfolded protein binding    
FPrintScan PR00626 CALRETICULIN 2.1e-50 112-130
141-157
239-252
287-309
344-363
376-396
HMMPanther PTHR11073 CALRETICULIN 4.4e-217 37-544
HMMPfam PF00262 Calreticulin 2.1e-139 39-395
IPR008985 Concanavalin A-like lectin/glucanases superfamily
superfamily SSF49899 Concanavalin 1e-06 29-281
367-412
IPR009033 Calreticulin/calnexin, P domain
Molecular Function GO:0005509 calcium ion binding    
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.10.250.10 no description 0.00041 266-346
347-367
superfamily SSF63887 P-domain 1.4e-56 225-366
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
Gene3D G3DSA:2.60.120.200 no description 1.2e-79 37-265
IPR018124 Calreticulin/calnexin, conserved site
Molecular Function GO:0005509 calcium ion binding    
PatternScan PS00803 CALRETICULIN_1 NA 110-125
PatternScan PS00804 CALRETICULIN_2 NA 145-153
PatternScan PS00805 CALRETICULIN_REPEAT NA 287-299
232-244
249-261
no_ID  
Coil coil coiled-coil NA 420-441
HMMPanther PTHR11073:SF1 CALNEXIN 4.4e-217 37-544
Seg seg seg NA 233-245
281-291
296-307
417-430
498-509
Putative transmembrane regions
  From To
TM segments
SOSUI		 6 28
475 497
Wolf-PSORT
Lj1g3v1387030.1	chlo 4, E.R. 3, vacu 2, golg 2, nucl 1, mito 1, extr 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1387030.1