Miyakogusa Predicted Gene

Lj1g3v1287000.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JAX8_MEDTR 320 72.6 79.5 (tr|G7JAX8) Ring-H2 zinc finger protein OS=Medicago truncatula GN=MTR_3g095560 PE=4 SV=1
TAIR_pep AT1G49230.1 237 56.0 66.7 | Symbols: | RING/U-box superfamily protein | chr1:18209320-18209979 FORWARD LENGTH=219
Medicago Medtr3g095560.1 320 72.6 79.5 | RING-H2 zinc finger protein | HC | chr3:43666563-43665579 | 20130731
Soybean Glyma04g39360.1 310 71.0 75.9  
LJGI gnl|LJGI|TC63970 1368 100.0 100.0 similar to UniRef100_A7QBB7 Cluster: Chromosome chr4 scaffold_73, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_73, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1287000.1 length: 229 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 3.1e-16 127-171
HMMSmart SM00184 Ring 1.4e-07 128-169
ProfileScan PS50089 ZF_RING_2 12.548 128-170
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.9e-18 125-173
no_ID  
HMMPanther PTHR22764 RING 3.2e-36 49-188
HMMPanther PTHR22764:SF18 ZINC 3.2e-36 49-188
Seg seg seg NA 184-199
superfamily SSF57850 RING/U-box 1.4e-22 99-176
Wolf-PSORT
Lj1g3v1287000.1	chlo 6, nucl 2, plas 2, E.R. 2, nucl_plas 2, E.R._plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1287000.1