Miyakogusa Predicted Gene

Lj1g3v0579700.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IT11_MEDTR 1365 75.8 83.0 (tr|G7IT11) WD repeat-containing protein OS=Medicago truncatula GN=MTR_2g059200 PE=4 SV=1
TAIR_pep AT3G42660.1 1025 61.1 75.5 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:14751280-14755701 FORWARD LENGTH=953
Medicago Medtr2g059200.1 1381 79.1 86.8 | transducin family protein/WD-40 repeat protein | HC | chr2:24447545-24441827 | 20130731
Soybean Glyma04g31220.1 1340 76.8 85.6  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0579700.1 length: 832 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.1e-07 56-90
140-174
236-266
HMMSmart SM00320 WD40 1.1e-08 4-47
51-90
93-132
135-174
177-223
226-266
ProfileScan PS50082 WD_REPEATS_2 11.845 58-99
142-183
234-268
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3e-58 402-403
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 34.724 58-275
superfamily SSF50978 WD40 2.1e-57 4-307
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 253-267
IPR022100 Protein of unknown function DUF3639
HMMPfam PF12341 DUF3639 2.5e-10 527-553
no_ID  
HMMPanther PTHR19932 WD 2e-242 1-824
HMMPanther PTHR19932:SF10 WD 2e-242 1-824
Seg seg seg NA 371-386
781-793
814-823
Wolf-PSORT
Lj1g3v0579700.1	nucl 5, cyto 4, chlo 2, cysk 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0579700.1