Miyakogusa Predicted Gene

Lj1g3v0096380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K3N9_MEDTR 1030 72.3 80.9 (tr|G7K3N9) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_5g006420 PE=4 SV=1
TAIR_pep AT4G14820.1 748 54.0 70.9 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8507794-8510038 REVERSE LENGTH=722
Medicago Medtr5g006420.1 1030 72.3 80.9 | organelle transcript processing protein, putative | HC | chr5:911890-915336 | 20130731
Soybean Glyma11g00850.1 1021 74.6 82.6  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0096380.1 length: 692 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00064 457-479
489-513
HMMPfam PF13041 PPR_2 5.8e-08 182-228
313-361
414-452
HMMTigr TIGR00756 PPR: 7.9e-07 184-217
288-317
316-349
389-415
417-450
ProfileScan PS51375 PPR 5.185 81-115
116-150
182-216
151-181
217-251
314-348
283-313
252-282
415-449
384-414
349-383
450-485
486-516
518-548
552-586
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.7e-05 515-571
no_ID  
HMMPanther PTHR24015 FAMILY 2e-288 17-692
HMMPanther PTHR24015:SF115SUBFAMILY NOT 2e-288 17-692
HMMPfam PF14432 DYW_deaminase 5.9e-07 602-691
Seg seg seg NA 21-31
48-72
113-124
638-652
superfamily SSF48452 TPR-like 0.02 154-340
389-618
Wolf-PSORT
Lj1g3v0096380.1	chlo 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0096380.1