Miyakogusa Predicted Gene

Lj1g3v0050950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LFP0_SOYBN 1202 75.7 85.4 (tr|I1LFP0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G02860.1 1051 65.7 81.3 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:654102-656561 FORWARD LENGTH=819
Medicago Medtr3g053350.1 1192 74.6 86.4 | PPR containing plant-like protein | HC | chr3:21211857-21206311 | 20130731
Soybean Glyma11g00310.1 1202 75.7 85.4  
LJGI gnl|LJGI|GO035880 464 85.1 85.1 similar to UniRef100_A7QW79 Cluster: Chromosome chr3 scaffold_199, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_199, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0050950.1 length: 782 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 9e-07 173-202
278-308
384-413
418-448
HMMPfam PF12854 PPR_1 5e-08 726-756
HMMPfam PF13041 PPR_2 1.5e-15 204-253
310-357
454-498
590-637
660-708
HMMTigr TIGR00756 PPR: 8.8e-08 172-205
207-241
243-276
278-311
313-347
348-382
383-417
418-451
454-486
489-522
594-626
629-661
663-697
698-731
ProfileScan PS51375 PPR 8.385 170-204
135-169
205-240
241-275
276-310
311-345
346-380
381-415
416-450
451-485
486-520
521-555
591-625
556-590
626-660
661-695
696-730
731-765
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 6.4e-05 378-470
727-759
no_ID  
HMMPanther PTHR24015 FAMILY 3.8e-180 12-744
HMMPanther PTHR24015:SF0 SUBFAMILY 3.8e-180 12-744
Seg seg seg NA 9-18
30-38
79-100
superfamily SSF81901 HCP-like 0.019 462-686
92-283
Wolf-PSORT
Lj1g3v0050950.1	chlo 4, nucl 2, cyto 2, plas 2, E.R. 2, cyto_nucl 2, nucl_plas 2, E.R._plas 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0050950.1