Miyakogusa Predicted Gene
- Lj0g3v0358949.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MLB0_SOYBN |
1003 |
87.0 |
93.1 |
(tr|K7MLB0) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G18560.1 |
728 |
62.8 |
80.4 |
| Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690 |
| Medicago |
--No_Hits--
|
|
|
|
|
| Soybean |
Glyma07g03280.1 |
107 |
21.9 |
40.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0358949.1 |
length: 553 aa. |
| IPR003656 |
Zinc finger, BED-type predicted |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| HMMSmart |
SM00614 |
BED |
5.2e-11 |
61-108 |
| IPR012337 |
Ribonuclease H-like domain |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
1.2e-33 |
197-506 |
| IPR025525 |
Domain of unknown function DUF4413 |
| HMMPfam |
PF14372 |
DUF4413 |
1.4e-09 |
433-512 |
| no_ID |
|
| HMMPanther |
PTHR10775 |
UNCHARACTERIZED |
1.1e-247 |
58-553 |
| HMMPanther |
PTHR10775:SF9 |
HAT |
1.1e-247 |
58-553 |
| Seg |
seg |
seg |
NA |
9-15 |
- Wolf-PSORT
Lj0g3v0358949.1 nucl 10, cyto 2, chlo 1, plas 1, cyto_pero 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0358949.1 |
|