Miyakogusa Predicted Gene
- Lj0g3v0345299.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KIB7_SOYBN |
224 |
48.5 |
62.2 |
(tr|K7KIB7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G43920.3 |
142 |
34.0 |
55.2 |
| Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:15753548-15760830 FORWARD LENGTH=1570 |
| Medicago |
Medtr3g105390.1 |
225 |
48.9 |
62.2 |
| endoribonuclease dicer-like protein | HC | chr3:48587251-48600607 | 20130731 |
| Soybean |
Glyma03g42290.2 |
98.2 |
41.7 |
62.6 |
|
| LJGI |
gnl|LJGI|DC598262 |
654 |
99.4 |
99.4 |
weakly similar to UniRef100_Q1KL58 Cluster: Dicer-like 2 spliceform 1; n=1; Arabidopsis thaliana|Rep: Dicer-like 2 spliceform 1 - Arabidopsis thaliana (Mouse-ear cress), partial (7%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0345299.1 |
length: 299 aa. |
| IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Molecular Function |
GO:0008026 |
ATP-dependent helicase activity |
|
|
| HMMPfam |
PF00270 |
DEAD |
8.3e-10 |
8-105 |
| IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
| ProfileScan |
PS51192 |
HELICASE_ATP_BIND_1 |
13.382 |
1-162 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.3e-16 |
6-115 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
1.1e-20 |
11-113 |
| HMMPanther |
PTHR14950 |
HELICASE-RELATED |
6.3e-43 |
1-248 |
| HMMPanther |
PTHR14950:SF1 |
HELICASE-RELATED |
6.3e-43 |
1-248 |
| Seg |
seg |
seg |
NA |
129-136 |
- Wolf-PSORT
Lj0g3v0345299.1 cyto 10, nucl 2, plas 1, E.R. 1, cysk_nucl 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0345299.1 |
|