Miyakogusa Predicted Gene

Lj0g3v0298949.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JJ86_SOYBN 1267 83.3 89.1 (tr|I1JJ86) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G54910.1 865 60.6 75.0 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:22298668-22301719 REVERSE LENGTH=739
Medicago Medtr5g092560.1 1172 80.8 87.0 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr5:40427970-40421694 | 20130731
Soybean Glyma02g45990.1 1267 83.3 89.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0298949.1 length: 728 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 218-226
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.3e-18 335-407
HMMSmart SM00490 helicase 6e-23 325-408
ProfileScan PS51194 HELICASE_CTER 17.639 294-446
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 7.8e-44 90-260
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 9.9e-53 85-289
ProfileScan PS51192 HELICASE_ATP_BIND_1 30.509 97-272
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.194 66-94
IPR025313 Domain of unknown function DUF4217
HMMPfam PF13959 DUF4217 1.1e-17 452-510
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.1e-62 137-431
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4e-38 64-277
278-430
HMMPanther PTHR24031 FAMILY 2.2e-279 2-694
HMMPanther PTHR24031:SF54 SUBFAMILY 2.2e-279 2-694
Seg seg seg NA 712-723
Wolf-PSORT
Lj0g3v0298949.1	nucl 8, cyto 4, cysk_nucl 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0298949.1 Not targeted -58.166 -16.844 -6.436 86.65% -34.886