Miyakogusa Predicted Gene

Lj0g3v0287409.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LT27_SOYBN 458 87.9 91.8 (tr|I1LT27) Uncharacterized protein OS=Glycine max PE=3 SV=2

TAIR_pep AT3G15370.1 354 68.3 80.1 | Symbols: ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA 1.24, EXPA12 | expansin 12 | chr3:5190649-5191982 FORWARD LENGTH=252

Medicago Medtr1g085460.1 295 55.6 72.6 | expansin-A1-like protein | HC | chr1:38164772-38166135 | 20130731

Soybean Glyma12g23200.1 442 90.1 94.4

LJGI --No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0287409.1 length: 251 aa.

IPR002963 Expansin

method AccNumber shortName E-value location

Biological Process GO:0009664 plant-type cell wall organization

FPrintScan PR01226 EXPANSIN 8.2e-55 57-71
86-97
99-109
113-130
155-167
167-188
203-224
232-248

IPR007112 Expansin/pollen allergen, DPBB domain

HMMSmart SM00837 Rare 6.7e-42 62-146

ProfileScan PS50842 EXPANSIN_EG45 30.271 45-156

IPR007117 Expansin, cellulose-binding-like domain

Gene3D G3DSA:2.60.40.760 no description 2.9e-32 151-250

HMMPfam PF01357 Pollen_allerg_1 1.1e-25 157-235

ProfileScan PS50843 EXPANSIN_CBD 22.574 166-246

superfamily SSF49590 PHL 6e-33 153-246

IPR007118 Expansin/Lol pI

Cellular Component GO:0005576 extracellular region

FPrintScan PR01225 EXPANSNFAMLY 1.9e-40 26-41
44-62
66-84
139-155
194-208
232-246

IPR009009 Barwin-related endoglucanase

HMMPfam PF03330 DPBB_1 4.4e-24 62-146

superfamily SSF50685 Barwin-like 2.9e-41 11-156

IPR014733 Barwin-like endoglucanase

Gene3D G3DSA:2.40.40.10 no description 4.3e-45 12-150

no_ID

HMMPanther PTHR31867 FAMILY 3.7e-141 4-251

HMMPanther PTHR31867:SF0 SUBFAMILY 3.7e-141 4-251

Putative transmembrane regions

From To

TM segments
SOSUI 2 24

Wolf-PSORT

Lj0g3v0287409.1 vacu 5, chlo 4, extr 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0287409.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LT27_SOYBN	458	87.9	91.8	(tr\|I1LT27) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep	AT3G15370.1	354	68.3	80.1	\| Symbols: ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA 1.24, EXPA12 \| expansin 12 \| chr3:5190649-5191982 FORWARD LENGTH=252
Medicago	Medtr1g085460.1	295	55.6	72.6	\| expansin-A1-like protein \| HC \| chr1:38164772-38166135 \| 20130731
Soybean	Glyma12g23200.1	442	90.1	94.4
LJGI	--No_Hits--

IPR002963	Expansin
Lj0g3v0287409.1				length: 251 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0009664	plant-type cell wall organization
FPrintScan	PR01226	EXPANSIN	8.2e-55	57-71 86-97 99-109 113-130 155-167 167-188 203-224 232-248
IPR007112	Expansin/pollen allergen, DPBB domain
HMMSmart	SM00837	Rare	6.7e-42	62-146
ProfileScan	PS50842	EXPANSIN_EG45	30.271	45-156
IPR007117	Expansin, cellulose-binding-like domain
Gene3D	G3DSA:2.60.40.760	no description	2.9e-32	151-250
HMMPfam	PF01357	Pollen_allerg_1	1.1e-25	157-235
ProfileScan	PS50843	EXPANSIN_CBD	22.574	166-246
superfamily	SSF49590	PHL	6e-33	153-246
IPR007118	Expansin/Lol pI
Cellular Component	GO:0005576	extracellular region
FPrintScan	PR01225	EXPANSNFAMLY	1.9e-40	26-41 44-62 66-84 139-155 194-208 232-246
IPR009009	Barwin-related endoglucanase
HMMPfam	PF03330	DPBB_1	4.4e-24	62-146
superfamily	SSF50685	Barwin-like	2.9e-41	11-156
IPR014733	Barwin-like endoglucanase
Gene3D	G3DSA:2.40.40.10	no description	4.3e-45	12-150
no_ID
HMMPanther	PTHR31867	FAMILY	3.7e-141	4-251
HMMPanther	PTHR31867:SF0	SUBFAMILY	3.7e-141	4-251