Miyakogusa Predicted Gene

Lj0g3v0281489.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1J8K2_SOYBN 580 75.6 79.1 (tr|I1J8K2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G38630.1 410 56.0 68.5 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386

Medicago Medtr5g022440.1 532 70.2 74.7 | 26S proteasome non-ATPase regulatory subunit-like protein | HC | chr5:8842916-8848889 | 20130731

Soybean Glyma01g36990.1 580 75.6 79.1

LJGI gnl|LJGI|TC58819 1187 100.0 100.0 similar to UniRef100_A7QDW0 Cluster: Chromosome chr4 scaffold_83, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_83, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0281489.1 length: 405 aa.

IPR002035 von Willebrand factor, type A

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:3.40.50.410 no description 1.1e-06 7-154

HMMSmart SM00327 von 2.8e-11 2-175

ProfileScan PS50234 VWFA 10.464 5-189

IPR003903 Ubiquitin interacting motif

HMMPfam PF02809 UIM 0.055 225-238
291-307
325-339

HMMSmart SM00726 Ubiquitin-interacting 15 223-242
292-311
324-343

ProfileScan PS50330 UIM 8.935 223-242

IPR027040 Proteasome subunit Rpn10

Biological Process GO:0006511 ubiquitin-dependent protein catabolic process

Cellular Component GO:0008540 proteasome regulatory particle, base subcomplex

HMMPanther PTHR10223 26S 6.5e-160 1-405

no_ID

Coil coil coiled-coil NA 233-254

HMMPanther PTHR10223:SF0 26S 6.5e-160 1-405

HMMPfam PF13519 VWA_2 5.2e-09 6-264

Seg seg seg NA 192-212
237-257
275-284
321-335
393-405

superfamily SSF53300 vWA-like 4.8e-39 3-167

Wolf-PSORT

Lj0g3v0281489.1 chlo 4, plas 2.5, nucl 2, cyto 2, mito 2, cyto_nucl 2, E.R._plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0281489.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1J8K2_SOYBN	580	75.6	79.1	(tr\|I1J8K2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G38630.1	410	56.0	68.5	\| Symbols: RPN10, MCB1, ATMCB1, MBP1 \| regulatory particle non-ATPase 10 \| chr4:18057357-18059459 REVERSE LENGTH=386
Medicago	Medtr5g022440.1	532	70.2	74.7	\| 26S proteasome non-ATPase regulatory subunit-like protein \| HC \| chr5:8842916-8848889 \| 20130731
Soybean	Glyma01g36990.1	580	75.6	79.1
LJGI	gnl\|LJGI\|TC58819	1187	100.0	100.0	similar to UniRef100_A7QDW0 Cluster: Chromosome chr4 scaffold_83, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr4 scaffold_83, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%)

IPR002035	von Willebrand factor, type A
Lj0g3v0281489.1				length: 405 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:3.40.50.410	no description	1.1e-06	7-154
HMMSmart	SM00327	von	2.8e-11	2-175
ProfileScan	PS50234	VWFA	10.464	5-189
IPR003903	Ubiquitin interacting motif
HMMPfam	PF02809	UIM	0.055	225-238 291-307 325-339
HMMSmart	SM00726	Ubiquitin-interacting	15	223-242 292-311 324-343
ProfileScan	PS50330	UIM	8.935	223-242
IPR027040	Proteasome subunit Rpn10
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process
Cellular Component	GO:0008540	proteasome regulatory particle, base subcomplex
HMMPanther	PTHR10223	26S	6.5e-160	1-405
no_ID
Coil	coil	coiled-coil	NA	233-254
HMMPanther	PTHR10223:SF0	26S	6.5e-160	1-405
HMMPfam	PF13519	VWA_2	5.2e-09	6-264
Seg	seg	seg	NA	192-212 237-257 275-284 321-335 393-405
superfamily	SSF53300	vWA-like	4.8e-39	3-167