Miyakogusa Predicted Gene
- Lj0g3v0276689.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SJS9_LOTJA |
534 |
98.8 |
99.6 |
(tr|I3SJS9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G01700.1 |
406 |
69.8 |
85.3 |
| Symbols: | Chitinase family protein | chr4:732413-733487 REVERSE LENGTH=280 |
| Medicago |
Medtr7g110780.1 |
446 |
82.1 |
93.9 |
| Chitinase | HC | chr7:45404688-45406446 | 20130731 |
| Soybean |
Glyma19g40960.1 |
458 |
81.4 |
91.9 |
|
| LJGI |
gnl|LJGI|TC57932 |
1669 |
99.9 |
99.9 |
similar to UniRef100_Q43322 Cluster: Chitinase; n=1; Arachis hypogaea|Rep: Chitinase - Arachis hypogaea (Peanut), partial (93%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0276689.1 |
length: 281 aa. |
| IPR000726 |
Glycoside hydrolase, family 19, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004568 |
chitinase activity |
|
|
| Biological Process |
GO:0006032 |
chitin catabolic process |
|
|
| Biological Process |
GO:0016998 |
cell wall macromolecule catabolic process |
|
|
| HMMPfam |
PF00182 |
Glyco_hydro_19 |
1.2e-102 |
43-275 |
| PatternScan |
PS00773 |
CHITINASE_19_1 |
NA |
61-83 |
| PatternScan |
PS00774 |
CHITINASE_19_2 |
NA |
188-198 |
| IPR016283 |
Glycoside hydrolase, family 19 |
| Molecular Function |
GO:0004568 |
chitinase activity |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| HMMPIR |
PIRSF001060 |
Endochitinase |
1.1e-151 |
1-275 |
| IPR023346 |
Lysozyme-like domain |
| superfamily |
SSF53955 |
Lysozyme-like |
4.2e-99 |
39-281 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.530.10 |
no description |
2.4e-52 |
182-275 |
| Gene3D |
G3DSA:3.30.20.10 |
no description |
1.3e-26 |
129-181 |
| HMMPanther |
PTHR22595 |
CHITINASE-RELATED |
3.8e-148 |
35-281 |
| HMMPanther |
PTHR22595:SF11 |
CLASS |
3.8e-148 |
35-281 |
| Seg |
seg |
seg |
NA |
2-23 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
4 |
26 |
- Wolf-PSORT
Lj0g3v0276689.1 chlo 4, extr 4, vacu 3, nucl 1, mito 1, golg 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0276689.1 |
|