Miyakogusa Predicted Gene
- Lj0g3v0260249.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SWT9_LOTJA |
434 |
91.5 |
91.5 |
(tr|I3SWT9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G24020.1 |
288 |
61.2 |
75.2 |
| Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:8678827-8679558 FORWARD LENGTH=243 |
| Medicago |
Medtr1g046800.1 |
367 |
77.5 |
86.1 |
| disease resistance-responsive, dirigent domain protein | HC | chr1:17659586-17658421 | 20130731 |
| Soybean |
Glyma10g25560.1 |
354 |
75.5 |
83.3 |
|
| LJGI |
gnl|LJGI|TC68438 |
1469 |
100.0 |
100.0 |
similar to UniRef100_A7NXR4 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (83%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0260249.1 |
length: 246 aa. |
| IPR004265 |
Plant disease resistance response protein |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03018 |
Dirigent |
2.1e-34 |
112-245 |
| no_ID |
|
| HMMPanther |
PTHR21495 |
NUCLEOPORIN-RELATED |
1.3e-71 |
18-237 |
| HMMPanther |
PTHR21495:SF14 |
OS07G0107100 |
1.3e-71 |
18-237 |
| Seg |
seg |
seg |
NA |
113-133 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
3 |
25 |
- Wolf-PSORT
Lj0g3v0260249.1 E.R. 4, extr 3, E.R._vacu 3, chlo 2, vacu 2, E.R._plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0260249.1 |
|