Miyakogusa Predicted Gene
- Lj0g3v0258129.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
M0ZU85_SOLTU |
324 |
43.9 |
54.9 |
(tr|M0ZU85) Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003158 PE=4 SV=1 |
| TAIR_pep |
AT5G46910.1 |
223 |
53.1 |
70.1 |
| Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787 |
| Medicago |
Medtr1g038400.1 |
273 |
69.1 |
77.0 |
| transcription factor jumonji family protein, putative | HC | chr1:14138656-14141615 | 20130731 |
| Soybean |
Glyma09g42040.1 |
298 |
71.6 |
80.5 |
|
| LJGI |
gnl|LJGI|BW594531 |
256 |
99.2 |
99.2 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0258129.1 |
length: 349 aa. |
| IPR003347 |
JmjC domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF02373 |
JmjC |
5.5e-20 |
154-221 |
| HMMSmart |
SM00558 |
A |
4.5e-09 |
71-238 |
| ProfileScan |
PS51184 |
JMJC |
15.635 |
71-238 |
| IPR003349 |
Transcription factor jumonji, JmjN |
| HMMPfam |
PF02375 |
JmjN |
4.1e-13 |
23-55 |
| HMMSmart |
SM00545 |
Small |
8.2e-12 |
21-62 |
| ProfileScan |
PS51183 |
JMJN |
13.300 |
22-63 |
| no_ID |
|
| HMMPanther |
PTHR10694 |
JUMONJI |
4.2e-44 |
167-343 |
| Seg |
seg |
seg |
NA |
293-309 |
| superfamily |
SSF51197 |
Clavaminate |
4.2e-16 |
167-257 |
- Wolf-PSORT
Lj0g3v0258129.1 nucl 7, cyto 3, pero 2, chlo 1, mito 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0258129.1 |
|