Miyakogusa Predicted Gene

Lj0g3v0254689.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7I8Y9_MEDTR 681 72.7 78.4 (tr|G7I8Y9) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g015070 PE=4 SV=1

TAIR_pep AT5G12010.1 617 78.8 91.2 | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502

Medicago --No_Hits--

Soybean Glyma20g23150.2 151 30.5 51.1

LJGI gnl|LJGI|TC62808 2359 99.9 99.9 similar to UniRef100_A7P4N6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (83%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0254689.1 length: 510 aa.

IPR026103 Harbinger transposase-derived nuclease

method AccNumber shortName E-value location

HMMPanther PTHR22930 UNCHARACTERIZED 1e-104 158-501

no_ID

HMMPfam PF13359 DDE_4 9.7e-39 299-455

Seg seg seg NA 30-41
50-65
105-114
122-156

Wolf-PSORT

Lj0g3v0254689.1 nucl 8, cyto 4, nucl_plas 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0254689.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7I8Y9_MEDTR	681	72.7	78.4	(tr\|G7I8Y9) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g015070 PE=4 SV=1
TAIR_pep	AT5G12010.1	617	78.8	91.2	\| Symbols: \| unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:3877975-3879483 REVERSE LENGTH=502
Medicago	--No_Hits--
Soybean	Glyma20g23150.2	151	30.5	51.1
LJGI	gnl\|LJGI\|TC62808	2359	99.9	99.9	similar to UniRef100_A7P4N6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (83%)

IPR026103	Harbinger transposase-derived nuclease
Lj0g3v0254689.1				length: 510 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR22930	UNCHARACTERIZED	1e-104	158-501
no_ID
HMMPfam	PF13359	DDE_4	9.7e-39	299-455
Seg	seg	seg	NA	30-41 50-65 105-114 122-156