Miyakogusa Predicted Gene

Lj0g3v0247179.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7L355_SOYBN 940 55.1 65.2 (tr|K7L355) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G34930.1 400 33.4 51.5 | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905
Medicago Medtr6g016195.1 1114 57.1 68.6 | LRR receptor-like kinase family protein | LC | chr6:5878477-5881686 | 20130731
Soybean Glyma16g30600.1 480 35.5 51.6  
LJGI gnl|LJGI|FS338700 1172 100.0 100.0 weakly similar to UniRef100_A7Q537 Cluster: Chromosome undetermined scaffold_51, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_51, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0247179.1 length: 993 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.052 256-276
673-691
698-720
723-743
822-839
843-864
ProfileScan PS51450 LRR 4.847 104-127
128-151
152-175
176-197
203-224
230-251
255-276
279-301
307-328
355-376
404-426
379-401
428-449
575-597
602-622
626-648
673-695
722-744
698-721
818-840
842-863
866-888
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 Leucine-rich 52 102-126
174-197
201-224
277-300
353-375
402-425
426-449
524-547
573-596
624-647
672-695
720-743
816-839
840-863
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 1.2e-09 33-69
IPR025875 Leucine rich repeat 4
HMMPfam PF12799 LRR_4 1.7e-07 403-440
no_ID  
FPrintScan PR00019 LEURICHRPT 1.7e-05 105-118
402-415
Gene3D G3DSA:3.80.10.10 no description 7.2e-62 29-313
314-590
797-906
HMMPanther PTHR24420 FAMILY 9.5e-120 88-921
HMMPfam PF13504 LRR_7 3.4 202-217
HMMPfam PF13855 LRR_8 2e-07 104-163
HMMSmart SM00365 Leucine-rich 3.4e+02 102-128
150-179
353-374
402-417
426-453
600-629
696-722
840-866
Seg seg seg NA 326-337
623-637
superfamily SSF52047 RNI-like 1.3e-49 254-568
superfamily SSF52058 L 3.1e-45 603-910
28-307
Putative transmembrane regions
  From To
TM segments
SOSUI		 6 27
937 959
Wolf-PSORT
Lj0g3v0247179.1	vacu 4, extr 3, E.R._vacu 3, plas 2, E.R. 2, E.R._plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0247179.1