Miyakogusa Predicted Gene
- Lj0g3v0234519.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KJ17_SOYBN |
1154 |
83.3 |
90.3 |
(tr|K7KJ17) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G09890.1 |
868 |
65.1 |
80.1 |
| Symbols: | Rhamnogalacturonate lyase family protein | chr1:3214237-3217386 REVERSE LENGTH=617 |
| Medicago |
Medtr3g111380.1 |
1080 |
80.0 |
85.7 |
| rhamnogalacturonate lyase B-like protein | HC | chr3:52050562-52046728 | 20130731 |
| Soybean |
Glyma04g09680.1 |
1125 |
83.9 |
90.9 |
|
| LJGI |
gnl|LJGI|BP041804 |
918 |
99.8 |
99.8 |
similar to UniRef100_A7NUJ3 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0234519.1 |
length: 675 aa. |
| IPR008979 |
Galactose-binding domain-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:2.60.120.260 |
no description |
1.6e-48 |
468-660 |
| superfamily |
SSF49785 |
Galactose-binding |
1.1e-50 |
468-661 |
| IPR010325 |
Rhamnogalacturonate lyase |
| HMMPfam |
PF06045 |
Rhamnogal_lyase |
3.3e-92 |
24-229 |
| IPR013784 |
Carbohydrate-binding-like fold |
| Molecular Function |
GO:0030246 |
carbohydrate binding |
|
|
| superfamily |
SSF49452 |
Starch-binding |
9e-12 |
357-465 |
| IPR014766 |
Carboxypeptidase, regulatory domain |
| Gene3D |
G3DSA:2.60.40.1120 |
no description |
6.2e-18 |
359-463 |
| no_ID |
|
| HMMPanther |
PTHR32018 |
FAMILY |
0 |
20-669 |
| HMMPanther |
PTHR32018:SF0 |
SUBFAMILY |
0 |
20-669 |
| Seg |
seg |
seg |
NA |
84-98 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
- Wolf-PSORT
Lj0g3v0234519.1 plas 4, chlo 2, E.R. 2, cyto_nucl 2, cysk_plas 2, mito_plas 2, nucl 1.5, cyto 1.5, E.R._vacu 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0234519.1 |
|