Miyakogusa Predicted Gene

Lj0g3v0234039.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B7FJ72_MEDTR 515 78.5 84.6 (tr|B7FJ72) Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1

TAIR_pep AT1G75380.3 442 66.2 77.0 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in basal defense response 1 | chr1:28281789-28283631 REVERSE LENGTH=325

Medicago Medtr3g112160.1 515 78.5 84.6 | wound-responsive family protein | HC | chr3:52496109-52492599 | 20130731

Soybean Glyma14g07830.1 345 68.8 77.5

LJGI gnl|LJGI|TC63855 1949 99.9 99.9 similar to UniRef100_Q9FWS6 Cluster: F1B16.9 protein; n=1; Arabidopsis thaliana|Rep: F1B16.9 protein - Arabidopsis thaliana (Mouse-ear cress), partial (78%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0234039.1 length: 328 aa.

IPR003729 Bifunctional nuclease domain

method AccNumber shortName E-value location

Molecular Function GO:0004518 nuclease activity

HMMPfam PF02577 DNase-RNase 1.4e-20 133-246

ProfileScan PS51658 BFN 37.713 117-252

superfamily SSF103256 Hypothetical 1e-40 116-261

no_ID

Seg seg seg NA 36-52
65-75

Wolf-PSORT

Lj0g3v0234039.1 chlo 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0234039.1 Twilight zone -9.840 0 -9.562 3.64% -0.277

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B7FJ72_MEDTR	515	78.5	84.6	(tr\|B7FJ72) Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
TAIR_pep	AT1G75380.3	442	66.2	77.0	\| Symbols: ATBBD1, BBD1 \| bifunctional nuclease in basal defense response 1 \| chr1:28281789-28283631 REVERSE LENGTH=325
Medicago	Medtr3g112160.1	515	78.5	84.6	\| wound-responsive family protein \| HC \| chr3:52496109-52492599 \| 20130731
Soybean	Glyma14g07830.1	345	68.8	77.5
LJGI	gnl\|LJGI\|TC63855	1949	99.9	99.9	similar to UniRef100_Q9FWS6 Cluster: F1B16.9 protein; n=1; Arabidopsis thaliana\|Rep: F1B16.9 protein - Arabidopsis thaliana (Mouse-ear cress), partial (78%)

IPR003729	Bifunctional nuclease domain
Lj0g3v0234039.1				length: 328 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004518	nuclease activity
HMMPfam	PF02577	DNase-RNase	1.4e-20	133-246
ProfileScan	PS51658	BFN	37.713	117-252
superfamily	SSF103256	Hypothetical	1e-40	116-261
no_ID
Seg	seg	seg	NA	36-52 65-75