Miyakogusa Predicted Gene

Lj0g3v0206989.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7L1D4_SOYBN 773 78.2 85.0 (tr|K7L1D4) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
TAIR_pep AT5G45140.1 685 68.2 80.9 | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161
Medicago Medtr8g023445.1 742 74.1 84.2 | DNA-directed RNA polymerase | LC | chr8:8458667-8488921 | 20130731
Soybean Glyma07g14980.1 446 80.7 86.2  
LJGI gnl|LJGI|BP075132 168 90.3 90.3  
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0206989.2 length: 486 aa.
IPR007642 RNA polymerase Rpb2, domain 2
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Gene3D G3DSA:3.90.1110.10 no description 1.1e-39 52-219
HMMPfam PF04561 RNA_pol_Rpb2_2 4.5e-19 51-230
IPR007644 RNA polymerase, beta subunit, protrusion
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04563 RNA_pol_Rpb2_1 6.5e-23 1-292
IPR007645 RNA polymerase Rpb2, domain 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04565 RNA_pol_Rpb2_3 1.4e-20 308-373
IPR007646 RNA polymerase Rpb2, domain 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04566 RNA_pol_Rpb2_4 1.4e-19 411-471
IPR015712 DNA-directed RNA polymerase, subunit 2
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0032549 ribonucleoside binding    
HMMPanther PTHR20856 DNA-DIRECTED 1.7e-264 1-486
no_ID  
Gene3D G3DSA:3.90.1100.10 no description 7.9e-46 220-383
HMMPanther PTHR20856:SF8 DNA-DIRECTED 1.7e-264 1-486
Seg seg seg NA 65-79
superfamily SSF64484 beta 1.8e-121 1-486
Wolf-PSORT
Lj0g3v0206989.2	cyto 6, chlo 3, cyto_pero 3, cyto_E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0206989.2