Miyakogusa Predicted Gene

Lj0g3v0183889.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SV38_LOTJA 570 92.6 92.6 (tr|I3SV38) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G70510.1 241 46.2 61.9 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis thaliana 2 | chr1:26576635-26582145 FORWARD LENGTH=310
Medicago Medtr1g084060.1 364 72.0 80.2 | homeobox knotted-like protein | HC | chr1:37495420-37488944 | 20130731
Soybean Glyma19g41610.3 332 58.0 70.3  
LJGI gnl|LJGI|TC66466 1782 99.9 99.9 similar to UniRef100_Q9SXV1 Cluster: KN1-type homeobox protein; n=1; Nicotiana tabacum|Rep: KN1-type homeobox protein - Nicotiana tabacum (Common tobacco), partial (64%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0183889.1 length: 299 aa.
IPR001356 Homeodomain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 1e-12 218-283
ProfileScan PS50071 HOMEOBOX_2 12.600 216-279
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 1.4e-09 196-217
ProfileScan PS51213 ELK 11.366 196-216
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 1.9e-21 55-98
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 4.5e-23 104-154
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 2.5e-16 236-275
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 9.4e-27 221-281
superfamily SSF46689 Homeodomain-like 1e-18 217-294
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 254-277
no_ID  
HMMPanther PTHR11850 HOMEOBOX 5.1e-52 56-279
Seg seg seg NA 212-231
Wolf-PSORT
Lj0g3v0183889.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0183889.1