Miyakogusa Predicted Gene

Lj0g3v0173139.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I2L6_MEDTR 979 80.6 84.7 (tr|G7I2L6) Pre-mRNA-processing factor OS=Medicago truncatula GN=MTR_1g072740 PE=4 SV=1
TAIR_pep AT1G10580.1 869 77.2 84.5 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3491560-3493665 REVERSE LENGTH=573
Medicago Medtr4g102520.1 977 80.2 84.8 | Pre-mRNA splicing factor | HC | chr4:42494871-42492105 | 20130731
Soybean Glyma10g33580.1 918 81.0 85.7  
LJGI gnl|LJGI|TC62194 1225 100.0 100.0 similar to UniRef100_Q9XIJ3 Cluster: T10O24.21; n=1; Arabidopsis thaliana|Rep: T10O24.21 - Arabidopsis thaliana (Mouse-ear cress), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0173139.1 length: 584 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.2e-06 286-323
328-366
415-452
517-541
546-584
HMMSmart SM00320 WD40 5.7e-06 283-323
327-366
369-410
413-452
456-495
501-541
544-584
ProfileScan PS50082 WD_REPEATS_2 8.570 290-324
334-375
420-452
519-550
551-584
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.5e-77 271-584
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 48.143 290-584
superfamily SSF50978 WD40 6.2e-76 280-584
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 310-324
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 5.8e-06 310-324
353-367
439-453
no_ID  
HMMPanther PTHR19852 FAMILY 0 9-584
HMMPanther PTHR19852:SF6 PRE-MRNA 0 9-584
Seg seg seg NA 9-21
30-43
174-188
219-236
Wolf-PSORT
Lj0g3v0173139.1	nucl 11, plas 1, vacu 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0173139.1