Miyakogusa Predicted Gene

Lj0g3v0154819.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I803_MEDTR 391 60.3 68.7 (tr|G7I803) RING finger family protein OS=Medicago truncatula GN=MTR_1g082550 PE=2 SV=1
TAIR_pep AT3G05200.1 223 41.3 51.4 | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398
Medicago Medtr1g082550.1 391 60.3 68.7 | zinc finger, C3HC4 type (RING finger) protein, putative | HC | chr1:36736012-36737619 | 20130731
Soybean Glyma10g29750.1 381 64.9 70.8  
LJGI gnl|LJGI|TC72704 1378 100.0 100.0 homologue to UniRef100_Q2HTN3 Cluster: Zinc finger, RING-type; n=1; Medicago truncatula|Rep: Zinc finger, RING-type - Medicago truncatula (Barrel medic), partial (36%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0154819.1 length: 362 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 5.9e-17 123-167
HMMSmart SM00184 Ring 5.9e-06 124-165
ProfileScan PS50089 ZF_RING_2 13.197 124-166
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.6e-20 122-169
no_ID  
HMMPanther PTHR22764 RING 3.4e-59 28-295
HMMPanther PTHR22764:SF10 PUTATIVE 3.4e-59 28-295
Seg seg seg NA 9-26
47-58
84-95
200-211
289-314
superfamily SSF57850 RING/U-box 3.5e-21 94-172
Putative transmembrane regions
  From To
TM segments
SOSUI		 10 30
48 70
Wolf-PSORT
Lj0g3v0154819.1	extr 4, vacu 4, E.R. 2, golg 2, mito 1, plas 1, mito_plas 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0154819.1