Miyakogusa Predicted Gene
- Lj0g3v0123269.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MPD1_SOYBN |
426 |
71.7 |
80.0 |
(tr|I1MPD1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G24030.1 |
209 |
40.2 |
54.5 |
| Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635 |
| Medicago |
Medtr6g034030.2 |
400 |
67.1 |
76.9 |
| C4-dicarboxylate transporter/malic acid transporter | HC | chr6:11360952-11366344 | 20130731 |
| Soybean |
Glyma16g29030.1 |
426 |
71.7 |
80.0 |
|
| LJGI |
gnl|LJGI|TC79580 |
1057 |
100.0 |
100.0 |
similar to UniRef100_A7QGD4 Cluster: Chromosome undetermined scaffold_91, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_91, whole genome shotgun sequence - Vitis vinifera (Grape), partial (32%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0123269.3 |
length: 301 aa. |
| IPR004695 |
C4-dicarboxylate transporter/malic acid transport protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF03595 |
C4dic_mal_tran |
7.6e-09 |
230-300 |
| no_ID |
|
| HMMPanther |
PTHR31269 |
FAMILY |
4e-63 |
134-300 |
| HMMPanther |
PTHR31269:SF0 |
SUBFAMILY |
4e-63 |
134-300 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
228 |
250 |
| 270 |
292 |
- Wolf-PSORT
Lj0g3v0123269.3 cyto 5, golg 5, chlo 1, nucl 1, plas 1, vacu 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0123269.3 |
|