Miyakogusa Predicted Gene
- Lj0g3v0117959.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KGV2_MEDTR |
320 |
47.3 |
67.8 |
(tr|G7KGV2) F-box/LRR-repeat protein OS=Medicago truncatula GN=MTR_5g080710 PE=4 SV=1 |
| TAIR_pep |
AT1G55030.1 |
120 |
29.8 |
47.5 |
| Symbols: | RNI-like superfamily protein | chr1:20530417-20531768 REVERSE LENGTH=422 |
| Medicago |
Medtr5g080710.1 |
320 |
47.3 |
67.8 |
| F-box/RNI/FBD-like domain protein | LC | chr5:34553680-34555368 | 20130731 |
| Soybean |
Glyma13g35370.1 |
199 |
46.5 |
65.7 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0117959.1 |
length: 379 aa. |
| IPR006566 |
FBD |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF08387 |
FBD |
1.4e-12 |
297-346 |
| HMMSmart |
SM00579 |
domain |
3.3e-11 |
306-376 |
| IPR013101 |
Leucine-rich repeat 2 |
| HMMPfam |
PF07723 |
LRR_2 |
1.7e-06 |
110-134 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
5.3e-15 |
32-289 |
| HMMPanther |
PTHR32484 |
FAMILY |
4.1e-50 |
1-378 |
| Seg |
seg |
seg |
NA |
106-119 |
| superfamily |
SSF52047 |
RNI-like |
7.2e-16 |
45-322 |
- Wolf-PSORT
Lj0g3v0117959.1 cyto 7.5, cyto_nucl 6.5, nucl 4.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0117959.1 |
|