Miyakogusa Predicted Gene

Lj0g3v0110929.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL F6HQE5_VITVI 204 50.0 67.9 (tr|F6HQE5) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00930 PE=4 SV=1

TAIR_pep AT5G39710.1 182 46.9 65.7 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747

Medicago Medtr1g033960.1 208 52.9 65.9 | PPR containing plant-like protein | HC | chr1:12282466-12279095 | 20130731

Soybean Glyma07g29110.1 150 38.8 55.5

LJGI gnl|LJGI|TC82170 408 85.5 85.5 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0110929.1 length: 255 aa.

IPR002885 Pentatricopeptide repeat

method AccNumber shortName E-value location

HMMPfam PF01535 PPR 9.5e-05 140-169

HMMTigr TIGR00756 PPR: 1.5e-05 140-171

ProfileScan PS51375 PPR 5.492 50-84
137-171
102-136

Wolf-PSORT

Lj0g3v0110929.1 chlo 11, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0110929.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	F6HQE5_VITVI	204	50.0	67.9	(tr\|F6HQE5) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00930 PE=4 SV=1
TAIR_pep	AT5G39710.1	182	46.9	65.7	\| Symbols: EMB2745 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:15895729-15897972 FORWARD LENGTH=747
Medicago	Medtr1g033960.1	208	52.9	65.9	\| PPR containing plant-like protein \| HC \| chr1:12282466-12279095 \| 20130731
Soybean	Glyma07g29110.1	150	38.8	55.5
LJGI	gnl\|LJGI\|TC82170	408	85.5	85.5	weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)

IPR002885	Pentatricopeptide repeat
Lj0g3v0110929.1				length: 255 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF01535	PPR	9.5e-05	140-169
HMMTigr	TIGR00756	PPR:	1.5e-05	140-171
ProfileScan	PS51375	PPR	5.492	50-84 137-171 102-136