Miyakogusa Predicted Gene

Lj0g3v0105239.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JGU3_MEDTR 948 83.0 90.9 (tr|G7JGU3) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_4g131300 PE=4 SV=1
TAIR_pep AT2G33680.1 666 60.0 78.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:14249608-14251791 FORWARD LENGTH=727
Medicago Medtr4g131300.1 948 83.0 90.9 | PPR containing plant-like protein | HC | chr4:54775340-54772788 | 20130731
Soybean Glyma13g22240.1 868 82.8 90.3  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0105239.1 length: 548 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00072 1-23
HMMPfam PF13041 PPR_2 2.6e-13 95-143
196-244
298-345
HMMPfam PF13812 PPR_3 0.36 70-90
HMMTigr TIGR00756 PPR: 0.0018 98-131
199-233
300-334
335-369
ProfileScan PS51375 PPR 7.388 1-24
96-130
65-95
30-64
197-231
166-196
232-266
298-332
267-297
333-363
369-404
435-469
no_ID  
HMMPanther PTHR24015 FAMILY 8e-250 1-520
HMMPanther PTHR24015:SF47 SUBFAMILY 8e-250 1-520
Putative transmembrane regions
  From To
TM segments
SOSUI		 60 82
Wolf-PSORT
Lj0g3v0105239.1	cyto 6, E.R. 3, cyto_pero 3, nucl 2, E.R._plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0105239.1