Miyakogusa Predicted Gene

Lj0g3v0073769.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q40201_LOTJA 280 99.3 99.3 (tr|Q40201) RAB1A OS=Lotus japonicus GN=rab1A PE=2 SV=1
TAIR_pep AT3G11730.1 256 87.6 95.6 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205
Medicago Medtr2g005500.1 246 87.5 93.4 | RAB GTPase-like protein B1C | HC | chr2:184631-186040 | 20130731
Soybean Glyma16g00340.1 271 95.6 98.5  
LJGI gnl|LJGI|TC67279 799 99.5 99.5 UniRef100_Q40201 Cluster: RAB1A; n=1; Lotus japonicus|Rep: RAB1A - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0073769.1 length: 137 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2e-32 9-30
32-48
50-72
112-125
HMMPfam PF00071 Ras 1.4e-50 10-137
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 1.8e-08 11-137
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 5.2e-62 9-137
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.1e-28 7-134
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 7e-09 6-137
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.7e-54 4-131
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.5e-56 2-136
HMMPanther PTHR24073 FAMILY 5.8e-100 1-137
HMMPanther PTHR24073:SF212SUBFAMILY NOT 5.8e-100 1-137
ProfileScan PS51419 RAB 30.534 4-137
Wolf-PSORT
Lj0g3v0073769.1	chlo 5, nucl 3, extr 3, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0073769.1