Miyakogusa Predicted Gene

Lj0g3v0019219.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G8A0H7_MEDTR 686 60.9 77.4 (tr|G8A0H7) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_103s0058 PE=4 SV=1
TAIR_pep AT1G12700.1 409 39.7 60.9 | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735
Medicago Medtr6g069300.1 682 64.0 80.3 | pentatricopeptide (PPR) repeat protein | HC | chr6:24933458-24936238 | 20130731
Soybean Glyma16g25410.1 674 63.7 79.4  
LJGI gnl|LJGI|AV766731 357 83.1 83.1 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0019219.1 length: 543 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 3.9e-11 154-185
261-292
366-397
HMMPfam PF13041 PPR_2 9.4e-17 88-136
194-242
300-348
405-453
475-521
HMMTigr TIGR00756 PPR: 0.0014 91-125
126-159
163-187
197-231
232-266
267-300
302-336
338-371
372-405
407-440
442-475
478-511
512-542
ProfileScan PS51375 PPR 9.887 89-123
124-158
159-189
195-229
230-264
265-299
300-334
335-369
370-404
405-439
475-509
440-474
510-543
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00036 403-538
no_ID  
HMMPanther PTHR24015 FAMILY 1.1e-164 31-542
HMMPanther PTHR24015:SF0 SUBFAMILY 1.1e-164 31-542
Seg seg seg NA 26-34
Wolf-PSORT
Lj0g3v0019219.1	chlo 6.5, chlo_mito 5, mito 2.5, extr 2, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0019219.1