Miyakogusa Predicted Gene

Lj6g3v2045710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2045710.1 Non Chatacterized Hit- tr|B9SR76|B9SR76_RICCO
Carnitine racemase, putative OS=Ricinus communis
GN=RC,48.08,9e-19,ClpP/crotonase,NULL; ECH,Crotonase, core; seg,NULL;
no description,NULL,CUFF.60605.1
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g31670.1                                                       114   2e-26
Glyma10g01070.1                                                       102   1e-22
Glyma18g52590.1                                                        97   3e-21
Glyma20g14280.1                                                        72   1e-13

>Glyma13g31670.1 
          Length = 241

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 79/108 (73%), Gaps = 4/108 (3%)

Query: 1   MCSLEKRDNLWVLTLTGDD---QNRLSPTVIQXXXXXXXXXXXQATPGSVLITTATGRFF 57
           MCSLEKR N WVLTL GDD   Q+RL+PT+I            QATPGSVL+TTATG+FF
Sbjct: 1   MCSLEKRGNAWVLTLDGDDGDVQHRLNPTLIDSLLSTLNRLASQATPGSVLVTTATGKFF 60

Query: 58  SNGFDLTWARAAGSESAY-DRLQSMVDPLRPAGAALVSPPMPTIAAVK 104
           SNGFDL+WARAA S SA  DRLQ MVD L+P  AA++S PMPTI A+ 
Sbjct: 61  SNGFDLSWARAAASASAATDRLQFMVDSLKPVLAAIMSLPMPTIVAIN 108


>Glyma10g01070.1 
          Length = 249

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 1   MCSLEKRDNLWVLTLTG--DDQNRLSPTVIQXXXXXXXXXXXQATPGSVLITTATGRFFS 58
           MC+LEKR  L+VLTLT   DDQ+RL+PT++            QAT GS L+T A GRFF 
Sbjct: 11  MCTLEKRGPLFVLTLTSEFDDQHRLNPTLLSSLLAALSEVKSQATAGSALLTAAHGRFFC 70

Query: 59  NGFDLTWARAAGSE-SAYDRLQSMVDPLRPAGAALVSPPMPTI 100
           NGFD  WA+AAG + SA  RL+ M D LRP  AAL+S P+PT+
Sbjct: 71  NGFDFRWAQAAGDQPSARLRLRRMSDALRPVLAALLSLPIPTV 113


>Glyma18g52590.1 
          Length = 238

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MCSLEKRDNLWVLTLTGDDQNRLSPTVIQXXXXXXXXXXXQATPGSVLITTATGRFFSNG 60
           MC+LEKR ++++LTLTGD ++RL+PT++            +AT  S L+TTA G+FFSNG
Sbjct: 1   MCTLEKRGSIFILTLTGDGEHRLNPTLLDSIQSSLRRVRQEATASSALVTTAHGKFFSNG 60

Query: 61  FDLTWARAAGSESAYDRLQSMVDPLRPAGAALVSPPMPTIAAV 103
           +D+ WAR+  S+   +R+  M   LR   + L++ PMPTIAAV
Sbjct: 61  YDIAWARS--SDEVKERMILMDSLLRSVVSDLLTLPMPTIAAV 101


>Glyma20g14280.1 
          Length = 191

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 12/103 (11%)

Query: 1   MCSLEKRDNLWVLTLTGDDQNRLSPTVIQXXXXXXXXXXXQATPGSVLITTATGRFFSNG 60
           MC+L+KR N+++LTLTG+ ++RL+PT++            +AT  S L+TT   +FFSN 
Sbjct: 1   MCTLKKRGNIFILTLTGEGEHRLNPTLLDSIQSSLHRVPQEATASSALVTTVHDKFFSNA 60

Query: 61  FDLTWARAAGSESAYDRLQSMVDPLRPAGAALVSPPMPTIAAV 103
           +D+ WA++  S+   +R+  M   L            PTIAAV
Sbjct: 61  YDIAWAQS--SDEVKERMILMDSLLHS----------PTIAAV 91