Miyakogusa Predicted Gene

Lj6g3v2006410.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006410.3 tr|Q0E463|Q0E463_ORYSJ Os02g0134300 protein
OS=Oryza sativa subsp. japonica GN=Os02g0134300 PE=4
SV=,80.28,2e-18,seg,NULL; Zinc beta-ribbon,NULL; Elf1,Transcription
elongation factor 1; SUBFAMILY NOT NAMED,NULL; U,CUFF.60462.3
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g21730.3                                                       110   3e-25
Glyma13g21730.2                                                       110   3e-25
Glyma13g21730.1                                                       110   3e-25
Glyma10g07950.1                                                        94   3e-20

>Glyma13g21730.3 
          Length = 90

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/57 (92%), Positives = 54/57 (94%)

Query: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNITALSEAIDIYSE 72
          MDKLDTVFSCPFCNHGSSVECR+DMKNLIGEA CGICQESFST ITALSE IDIYSE
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITALSEPIDIYSE 72


>Glyma13g21730.2 
          Length = 90

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/57 (92%), Positives = 54/57 (94%)

Query: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNITALSEAIDIYSE 72
          MDKLDTVFSCPFCNHGSSVECR+DMKNLIGEA CGICQESFST ITALSE IDIYSE
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITALSEPIDIYSE 72


>Glyma13g21730.1 
          Length = 90

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/57 (92%), Positives = 54/57 (94%)

Query: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNITALSEAIDIYSE 72
          MDKLDTVFSCPFCNHGSSVECR+DMKNLIGEA CGICQESFST ITALSE IDIYSE
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITALSEPIDIYSE 72


>Glyma10g07950.1 
          Length = 77

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 45/48 (93%)

Query: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNITAL 63
          MDKLDTVFSCPFCNHGSSVECR+DMKNLIGEA CGICQESFST IT L
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITGL 63