Miyakogusa Predicted Gene

Lj6g3v0215830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0215830.1 Non Chatacterized Hit- tr|G3MI19|G3MI19_9ACAR
Putative uncharacterized protein (Fragment)
OS=Amblyom,37.66,2e-19,DNA_pol_E_B,DNA polymerase alpha/epsilon,
subunit B; SUBFAMILY NOT NAMED,NULL; DNA POLYMERASE 2
ALPH,CUFF.57602.1
         (157 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g37330.1                                                       270   3e-73
Glyma18g01290.1                                                       254   3e-68
Glyma11g37330.2                                                       239   1e-63
Glyma11g37330.3                                                        82   3e-16

>Glyma11g37330.1 
          Length = 574

 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 143/154 (92%), Gaps = 5/154 (3%)

Query: 3   SAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTMDIL 62
           SA RVLLVPSIRDANHDFVFPQPA DI     KSQIVSL+NPG+FEAN+VKVGCCT+DIL
Sbjct: 395 SATRVLLVPSIRDANHDFVFPQPAFDI-----KSQIVSLSNPGIFEANKVKVGCCTVDIL 449

Query: 63  KQLSGEEISRTAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLSLI 122
           KQ+SGEEISRTAADGKP+DRLSRLANHILNQQSFYPLY PAESVPLD SLAPEALQLS +
Sbjct: 450 KQISGEEISRTAADGKPIDRLSRLANHILNQQSFYPLYTPAESVPLDFSLAPEALQLSFV 509

Query: 123 PDVLIIPSDIKYFVKVLSSEHEGIDHAKCVAVNP 156
           PD+LI+PSDIKYFVKVLSSE+EGI+H KC+A+NP
Sbjct: 510 PDILILPSDIKYFVKVLSSENEGINHTKCIAINP 543


>Glyma18g01290.1 
          Length = 598

 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 136/154 (88%), Gaps = 13/154 (8%)

Query: 3   SAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTMDIL 62
           SA RV+LVPSIRDANHDFVFPQ             IVSL+NPG+FEAN+VKVGCCT+DIL
Sbjct: 427 SATRVVLVPSIRDANHDFVFPQ-------------IVSLSNPGIFEANKVKVGCCTVDIL 473

Query: 63  KQLSGEEISRTAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLSLI 122
           KQ+SGEEISRTAADGKP+DRLSRLANHILNQQSFYPLYPPAE VPLD SLAPEALQLS I
Sbjct: 474 KQISGEEISRTAADGKPIDRLSRLANHILNQQSFYPLYPPAEGVPLDFSLAPEALQLSSI 533

Query: 123 PDVLIIPSDIKYFVKVLSSEHEGIDHAKCVAVNP 156
           PD+LI+PSDIKYFVKVLSSE+EGI+H KC+AVNP
Sbjct: 534 PDILILPSDIKYFVKVLSSENEGINHTKCIAVNP 567


>Glyma11g37330.2 
          Length = 533

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 126/137 (91%), Gaps = 5/137 (3%)

Query: 3   SAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTMDIL 62
           SA RVLLVPSIRDANHDFVFPQPA DI     KSQIVSL+NPG+FEAN+VKVGCCT+DIL
Sbjct: 395 SATRVLLVPSIRDANHDFVFPQPAFDI-----KSQIVSLSNPGIFEANKVKVGCCTVDIL 449

Query: 63  KQLSGEEISRTAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLSLI 122
           KQ+SGEEISRTAADGKP+DRLSRLANHILNQQSFYPLY PAESVPLD SLAPEALQLS +
Sbjct: 450 KQISGEEISRTAADGKPIDRLSRLANHILNQQSFYPLYTPAESVPLDFSLAPEALQLSFV 509

Query: 123 PDVLIIPSDIKYFVKVL 139
           PD+LI+PSDIKYFVK L
Sbjct: 510 PDILILPSDIKYFVKKL 526


>Glyma11g37330.3 
          Length = 443

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 44/52 (84%), Gaps = 5/52 (9%)

Query: 3   SAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKV 54
           SA RVLLVPSIRDANHDFVFPQPA DI     KSQIVSL+NPG+FEAN+ KV
Sbjct: 395 SATRVLLVPSIRDANHDFVFPQPAFDI-----KSQIVSLSNPGIFEANKQKV 441