Miyakogusa Predicted Gene

Lj4g3v3113250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113250.1 tr|B3H572|B3H572_ARATH Nucleotide excision
repair, TFIIH, subunit TTDA OS=Arabidopsis thaliana
GN=At,59.72,5e-18,Tbf5,Nucleotide excision repair, TFIIH, subunit
TTDA; no description,Nucleotide excision repair, TFI,CUFF.52333.1
         (70 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g34510.1                                                       145   1e-35
Glyma08g05180.1                                                       143   5e-35

>Glyma05g34510.1 
          Length = 115

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)

Query: 1   MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKF 60
           MVNATKGVFISCDIPMAQYIINMNAS+PASDKFIIHILDNTHMFVQPHVEQMIRSQ+AKF
Sbjct: 46  MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSQIAKF 105

Query: 61  REDNTYVKPN 70
           REDNTYVKPN
Sbjct: 106 REDNTYVKPN 115


>Glyma08g05180.1 
          Length = 70

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/70 (95%), Positives = 70/70 (100%)

Query: 1  MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKF 60
          MVNATKGVFISCDIPMAQYIINMNAS+PASDKFIIHILDNTHMFVQPHVEQMIRS++AKF
Sbjct: 1  MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSRIAKF 60

Query: 61 REDNTYVKPN 70
          REDNTYVKPN
Sbjct: 61 REDNTYVKPN 70