Miyakogusa Predicted Gene

Lj4g3v2789350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2789350.1 tr|D8RYR6|D8RYR6_SELML LHC-related protein
OS=Selaginella moellendorffii GN=SEP2_1 PE=4
SV=1,32.62,0.00000000000003,Chloroa_b-bind,Chlorophyll A-B binding
protein,CUFF.51671.1
         (196 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g14960.1                                                       282   2e-76
Glyma05g31710.1                                                       270   7e-73

>Glyma08g14960.1 
          Length = 197

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 160/198 (80%), Gaps = 5/198 (2%)

Query: 1   MASVSRVAHCNLRQAKPAAARPRNQPGPVQLSIPRAKPVESDQTGNSNIVLQPRLCTLRS 60
           MAS +R+ HC LR A+PA  RPR   GPVQ++IP+ KP  ++  G +NIVLQPRLCTLRS
Sbjct: 1   MASATRLVHCELRSARPAV-RPREPAGPVQVTIPKPKPKAAEAEG-ANIVLQPRLCTLRS 58

Query: 61  YGPDR---VINKNAINLADDVSPFFATLSDHIESSKKSQDFEIISGRLAMMVFAATVTVE 117
           YG DR   +I        DDVSPFFA LSD+IESSKKSQDFEIISGRLAMMVFAATVT+E
Sbjct: 59  YGSDRAGVLIKTRKEGDHDDVSPFFAALSDYIESSKKSQDFEIISGRLAMMVFAATVTME 118

Query: 118 IVTGSSVFRKMDVAGIAEAGGVCLAAVTLAAVFAWFSSARNRVGSIFNLSYNAFIDSLID 177
           +VTG+SVFRKMD+ GI EAGGVCL AVT AA+FAWF SARNRVG IF +S NAFIDS+ID
Sbjct: 119 VVTGNSVFRKMDIEGITEAGGVCLGAVTCAALFAWFCSARNRVGRIFTVSCNAFIDSVID 178

Query: 178 QIVDGLFYESEPSDWSDE 195
           QI+DGLFYE +P+DW DE
Sbjct: 179 QIIDGLFYEGDPTDWPDE 196


>Glyma05g31710.1 
          Length = 206

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 137/199 (68%), Positives = 158/199 (79%), Gaps = 8/199 (4%)

Query: 1   MASVSRVAHCNLRQAKPAAARPRNQPGPVQLSIPRAKPVESDQTGNSNIVLQPRLCTLRS 60
           MAS +R+ HC LR A+PA  R R   GPVQ++IP+ K  E++    +NIVLQPRLCTLRS
Sbjct: 11  MASATRLVHCELRSARPAV-RAREPAGPVQVTIPKPKAAEAE---GANIVLQPRLCTLRS 66

Query: 61  YGPDR---VINKNAINLADDVSPFFATLSDHIESSKKSQDFEIISGRLAMMVFAATVTVE 117
           YG DR   +I        DDVSPFFA LSD+IESSKKS DFEIISGRLAMMVFAATVT+E
Sbjct: 67  YGSDRAGVLIKARKEGDDDDVSPFFAALSDYIESSKKSHDFEIISGRLAMMVFAATVTME 126

Query: 118 IVTGSSVFRKMDVAGIAEAGGVCLAAVTLAAVFAWFSSARNRVGSIFNLSYNAFIDSLID 177
           +VTG+S+FRKMD+ GI EAGGVCL AVT AA+FAWFSSARNRVG IF +S NAFIDS+ID
Sbjct: 127 MVTGNSMFRKMDIEGITEAGGVCLGAVTCAALFAWFSSARNRVGRIFTVSCNAFIDSVID 186

Query: 178 QIVDGLFYES-EPSDWSDE 195
           QIVDGLFYE  +P+DW DE
Sbjct: 187 QIVDGLFYEGDDPTDWPDE 205