Miyakogusa Predicted Gene

Lj4g3v2603730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603730.1 tr|G7LHV2|G7LHV2_MEDTR Actin-related protein 2/3
complex subunit OS=Medicago truncatula GN=MTR_8g085,97.65,0,Arp2/3
complex subunits,NULL; ARPC4,ARP23 complex 20kDa subunit; no
description,NULL; ARP2/3 COMPLEX,CUFF.51209.1
         (170 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g11740.1                                                       336   6e-93
Glyma05g28650.2                                                       334   2e-92
Glyma05g28650.1                                                       280   7e-76
Glyma01g34750.1                                                        99   2e-21
Glyma06g37160.1                                                        77   6e-15

>Glyma08g11740.1 
          Length = 169

 Score =  336 bits (862), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 165/168 (98%), Positives = 167/168 (99%)

Query: 3   SNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 62
           +NTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC
Sbjct: 2   ANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 63  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 122
           LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 123 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 170
           HCE+MQK KLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169


>Glyma05g28650.2 
          Length = 169

 Score =  334 bits (857), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/168 (97%), Positives = 167/168 (99%)

Query: 3   SNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 62
           ++TLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC
Sbjct: 2   ASTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 63  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 122
           LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 123 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 170
           HCE+MQK KLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169


>Glyma05g28650.1 
          Length = 170

 Score =  280 bits (715), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/140 (96%), Positives = 138/140 (98%)

Query: 3   SNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 62
           ++TLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC
Sbjct: 2   ASTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 63  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 122
           LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 123 HCEDMQKQKLIDFIVQFMED 142
           HCE+MQK KLIDFIVQFME 
Sbjct: 122 HCEEMQKHKLIDFIVQFMES 141


>Glyma01g34750.1 
          Length = 114

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 47  LLLNPVLICRNEAEKCLIETSINSLRISLKVKQA-DELENILTKKFLRFLSMRAEAFQVL 105
           LLL PV +      +  I T  N    ++ +KQ  +ELENILTKKFLRFLSMR EAFQVL
Sbjct: 25  LLLIPVPLFFTTLGRINIITGPNFSGKNIYLKQVINELENILTKKFLRFLSMRVEAFQVL 84

Query: 106 RRKPVQGYDISFLITNYHCEDMQKQKLIDF 135
           RRK VQGYDISFLITNYHCEDM     + F
Sbjct: 85  RRKLVQGYDISFLITNYHCEDMTLASFLKF 114


>Glyma06g37160.1 
          Length = 43

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 81  DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 120
           +ELENILTKKFLRFL MR EAFQVLRRKPVQGYDISFLIT
Sbjct: 1   NELENILTKKFLRFLLMRVEAFQVLRRKPVQGYDISFLIT 40