Miyakogusa Predicted Gene

Lj4g3v2121660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2121660.1 tr|A9SIR8|A9SIR8_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,56.47,8e-17,MRP-S33,Ribosomal protein S27/S33,
mitochondrial; seg,NULL,NODE_69823_length_611_cov_83.433716.path2.1
         (94 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g01510.2                                                       135   1e-32
Glyma07g07930.1                                                       135   1e-32
Glyma03g01510.1                                                       116   7e-27
Glyma03g20140.1                                                       110   3e-25

>Glyma03g01510.2 
          Length = 102

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 72/94 (76%)

Query: 1   MLTAAITGGVTEARASIFGHQLNLTGKKSPHKVLRMKLFGEKVAQWYPHDIKKDDPLVMA 60
           ML+ A+  GV EARA IFGHQLN TG K+PHK+LRMKLFGEKVAQWYPHDIKKDDPLVMA
Sbjct: 9   MLSVAMNQGVVEARARIFGHQLNPTGMKTPHKLLRMKLFGEKVAQWYPHDIKKDDPLVMA 68

Query: 61  REQQERLSKLEMLXXXXXXXXXXXXXXXAAKRNK 94
           R++QERLSKLEML               AAKRNK
Sbjct: 69  RQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102


>Glyma07g07930.1 
          Length = 102

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 73/94 (77%)

Query: 1   MLTAAITGGVTEARASIFGHQLNLTGKKSPHKVLRMKLFGEKVAQWYPHDIKKDDPLVMA 60
           ML+ AI  GV E+RA IFGHQLN TG+++PHK+LRMKLFGEKVAQWYPHDIKKDDPLVMA
Sbjct: 9   MLSEAINKGVVESRARIFGHQLNPTGQQTPHKLLRMKLFGEKVAQWYPHDIKKDDPLVMA 68

Query: 61  REQQERLSKLEMLXXXXXXXXXXXXXXXAAKRNK 94
           R++QERLSKLEML               AAKRNK
Sbjct: 69  RQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102


>Glyma03g01510.1 
          Length = 102

 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 59/67 (88%)

Query: 1  MLTAAITGGVTEARASIFGHQLNLTGKKSPHKVLRMKLFGEKVAQWYPHDIKKDDPLVMA 60
          ML+ A+  GV EARA IFGHQLN TG K+PHK+LRMKLFGEKVAQWYPHDIKKDDPLVMA
Sbjct: 9  MLSVAMNQGVVEARARIFGHQLNPTGMKTPHKLLRMKLFGEKVAQWYPHDIKKDDPLVMA 68

Query: 61 REQQERL 67
          R++QE L
Sbjct: 69 RQEQEGL 75


>Glyma03g20140.1 
          Length = 73

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 55/64 (85%)

Query: 1  MLTAAITGGVTEARASIFGHQLNLTGKKSPHKVLRMKLFGEKVAQWYPHDIKKDDPLVMA 60
          +L+A I  G  EARA IFGHQLN  G K+PHK+LRMKLFGEKVAQWYPHDIKKDDPLVMA
Sbjct: 9  VLSAVINQGAAEARAWIFGHQLNPAGNKTPHKILRMKLFGEKVAQWYPHDIKKDDPLVMA 68

Query: 61 REQQ 64
          R++Q
Sbjct: 69 RQEQ 72