Miyakogusa Predicted Gene

Lj4g3v1865750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1865750.1 Non Chatacterized Hit- tr|C5YHD4|C5YHD4_SORBI
Putative uncharacterized protein Sb07g004080
OS=Sorghu,38.64,3e-17,CCCH zinc finger,NULL; zf-CCCH,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type; no descriptio,CUFF.49770.1
         (341 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g08450.1                                                       476   e-134
Glyma17g12560.1                                                       438   e-123
Glyma01g10610.1                                                       159   4e-39
Glyma20g39160.1                                                        69   8e-12
Glyma10g44330.1                                                        69   9e-12
Glyma03g30020.1                                                        62   1e-09
Glyma03g30030.1                                                        60   4e-09
Glyma19g32910.1                                                        57   3e-08
Glyma10g41530.1                                                        52   7e-07
Glyma20g25710.1                                                        51   2e-06

>Glyma05g08450.1 
          Length = 345

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/343 (66%), Positives = 273/343 (79%), Gaps = 14/343 (4%)

Query: 1   MTFPDHLPTFAMMSPARFSSDSDAIDVRHQFPMSNEPLNPRSGFDQAPPFKRARNFDNGH 60
           M+F DH+P+F MMSP  FS+D+DAI+VR QFP +NE L P S  DQ P FKRAR  D+  
Sbjct: 1   MSFSDHIPSF-MMSPPSFSTDTDAIEVRLQFPTNNESLEPHSPQDQPPSFKRARTCDSSL 59

Query: 61  SNGLSGPPRANQQPQNSQPNRGTSHIFFKTRLCAKFRHGSCRNGETCNFAHGVDDMRQPP 120
           SN ++ PPR  Q P     N+GTSHIFFKTR+CAKFR G+CRNGE CNFAHG++DMRQPP
Sbjct: 60  SNAMACPPRMIQHPAL---NKGTSHIFFKTRICAKFRAGACRNGENCNFAHGLEDMRQPP 116

Query: 121 PNWQEIVGLRGGDERPLSGNWDDDQKIIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFR 180
           PNWQE+VGLR  +  P  G+WDDDQKII KMKLCKKYYNGEECPYG+KCSFLHEDP +FR
Sbjct: 117 PNWQELVGLRNEERPPTMGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFR 176

Query: 181 DDSGRFRESSAISIGTNGSPKSYGDGSNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIK 240
           DDS R+RES+AISIGTNGSPKSYGD SNN E N +AV+TG N+ +GNVKSTYWKTKLCIK
Sbjct: 177 DDSVRYRESTAISIGTNGSPKSYGDASNNLESN-RAVNTGLNVFRGNVKSTYWKTKLCIK 235

Query: 241 WDKTGNCPFGEDCHFAHGEGELQVPGGRTEVE---------SAAVATLPKALSVAANEAT 291
           ++ TG+CPFG+DCHFAHG+ ELQVPGGRTE E          A + TLP+A SV++N+A 
Sbjct: 236 FETTGHCPFGDDCHFAHGQAELQVPGGRTEAEIPGAIPISTKATIPTLPRATSVSSNDAP 295

Query: 292 TTHAASETPMDEDEQAKKRLQKWKINKKINRIYGDWIDDLPLV 334
            +H AS  P +E++Q +K L KWK ++KINRIYGDW+DDLPLV
Sbjct: 296 PSHRASVLPANEEDQDEKCLLKWKGHRKINRIYGDWLDDLPLV 338


>Glyma17g12560.1 
          Length = 321

 Score =  438 bits (1127), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/341 (63%), Positives = 257/341 (75%), Gaps = 28/341 (8%)

Query: 1   MTFPDHLPTFAMMSPARFSSDSDAIDVRHQFPMSNEPLNPRSGFDQAPPFKRARNFDNGH 60
           M+F DH+P+F MMSP  FS+D+DAI+VR QFPM+NE L P S  D+ P FKRAR  DN  
Sbjct: 1   MSFSDHIPSF-MMSPPSFSTDTDAIEVRLQFPMNNESLEPHSPQDRPPSFKRARTCDNSL 59

Query: 61  SNGLSGPPRANQQPQNSQPNRGTSHIFFKTRLCAKFRHGSCRNGETCNFAHGVDDMRQPP 120
           SN ++ PPR  Q P     N+GTSHIFFKTR+CAKFR G+CRNGE CNFAHG++DMRQPP
Sbjct: 60  SNAMACPPRMIQHPA---VNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMRQPP 116

Query: 121 PNWQEIVGLRGGDERPLSGNWDDDQKIIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFR 180
           PNWQE+VGLRG +  P++G+WDDDQKII KMKLCKKYYNGEECPYG+KCSFLHEDP +FR
Sbjct: 117 PNWQELVGLRGEERPPMAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFR 176

Query: 181 DDSGRFRESSAISIGTNGSPKSYGDGSNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIK 240
           DDS R+RES++ISIGTNGSPKSYGD SNN E N +AV+TG N+ +GNVKSTYWKTKLCIK
Sbjct: 177 DDSVRYRESTSISIGTNGSPKSYGDASNNLESN-RAVNTGLNVFRGNVKSTYWKTKLCIK 235

Query: 241 WDKTGNCPFGEDCHFAHGEGELQVPGGRTEVESAAVATLPKALSV--------AANEATT 292
           ++ TG+CPFG+DCHFAHG+               AV TL   L +        AA   + 
Sbjct: 236 FETTGHCPFGDDCHFAHGQ---------------AVITLCLCLRICLGFLINPAARNFSL 280

Query: 293 THAASETPMDEDEQAKKRLQKWKINKKINRIYGDWIDDLPL 333
              AS  P +E E+ KK L KWK +KKINRIYGDW+DDLPL
Sbjct: 281 IEIASVPPANEKERDKKYLLKWKGHKKINRIYGDWLDDLPL 321


>Glyma01g10610.1 
          Length = 346

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 151/305 (49%), Gaps = 37/305 (12%)

Query: 43  GFDQAPPFKRARNFDNGHSNGLSGPPRANQQPQNSQPNRGTSHIFFKTRLCAKFRHGSCR 102
           G    PP K++RN              ++Q+  +S  ++    +FFKT+LC KFR G+C 
Sbjct: 62  GRSSEPPSKKSRN--------------SSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCP 107

Query: 103 NGETCNFAHGVDDMRQPPPNWQEIVGLRGGDER-PLSGNWDDDQKIIQ---KMKLCKKYY 158
               CNFAH ++++R+PPPNWQEIV     ++  P  G+     +++Q   K + CKK+Y
Sbjct: 108 YITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAIPTVGSTTFSGEMMQRSYKGRHCKKFY 167

Query: 159 NGEECPYGEKCSFLHEDPGKFRDDSGRFRESSAISIGTNGSPKSYGDGSNNSEGNSKAVD 218
             E CPYG+ C+FLH       D+  + RES AIS+G  G     G G     G S    
Sbjct: 168 TEEGCPYGDSCTFLH-------DEQSKNRESVAISLGPGGYGGGGGGGGGVGGGASGGNG 220

Query: 219 TGSNISKGNV-KSTYWKTKLCIKWDKTGNCPFGEDCHFAHGEGELQVPGG------RTEV 271
             +    G   K + WKT++C KW+ TG CPFG  CHFAHG  EL   GG        + 
Sbjct: 221 GANAAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDA 280

Query: 272 ESAAVATLPKALSVAAN-----EATTTHAASETPMDEDEQAKKRLQKWKINKKINRIYGD 326
            SA      K +   A+      A T  A S+         +    KWK   KI+RIYGD
Sbjct: 281 ASAVAGDTNKGVPSKASADNVVAAVTLVAHSDVYHIGVPSQRPSSMKWKGPDKISRIYGD 340

Query: 327 WIDDL 331
           WIDD+
Sbjct: 341 WIDDI 345


>Glyma20g39160.1 
          Length = 297

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 24/136 (17%)

Query: 150 KMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRESS---AISIGTNGSPKSYGDG 206
           K K C K+++   CP+GE C FLH  PG F+  S      S      +G N  P S+ DG
Sbjct: 35  KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVTPQVGRNPVPPSFPDG 94

Query: 207 SNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCPFGEDCHFAHGEGELQVPG 266
           S+                         KT+LC K++    C FG+ CHFAHGE EL  P 
Sbjct: 95  SS---------------------PPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPT 133

Query: 267 GRTEVESAAVATLPKA 282
             +  +   +  +P +
Sbjct: 134 APSYEDPRVLGQMPSS 149



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 65  SGPPRANQQPQNSQPNRGTSHIFFKTRLCAKFRHGSCRNGETCNFAHGVDDMRQ 118
           SGPP  +   Q S P        FKT+LC  F  GSC  GE C+FAHG D++R+
Sbjct: 246 SGPPMKSFTSQTSAPTSN-----FKTKLCENFAKGSCTFGERCHFAHGTDELRK 294


>Glyma10g44330.1 
          Length = 297

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 24/136 (17%)

Query: 150 KMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRESS---AISIGTNGSPKSYGDG 206
           K K C K+++   CP+GE C FLH  PG F+  S      S      +G N  P S+ DG
Sbjct: 35  KSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVIPQVGRNPVPPSFPDG 94

Query: 207 SNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCPFGEDCHFAHGEGELQVPG 266
           S+                         KT+LC K++    C FG+ CHFAHGE EL  P 
Sbjct: 95  SS---------------------PPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPT 133

Query: 267 GRTEVESAAVATLPKA 282
             +  +   +  +P +
Sbjct: 134 APSYEDPRVMGQMPSS 149



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 65  SGPPRANQQPQNSQPNRGTSHIFFKTRLCAKFRHGSCRNGETCNFAHGVDDMRQ 118
           SGPP  +   QNS P        FKT+LC  F  GSC  GE C+FAHG D++R+
Sbjct: 246 SGPPMKSFTSQNSAPASN-----FKTKLCENFAKGSCTFGERCHFAHGNDELRK 294


>Glyma03g30020.1 
          Length = 295

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 18/134 (13%)

Query: 129 LRGGDERPLSGNWDDDQKIIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRE 188
           L GG +R           +  K K C K+++   CP+GE C FLH  PG +         
Sbjct: 15  LNGGFKRSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGY--------- 65

Query: 189 SSAISIGTNGSPKSYGDGSNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCP 248
            +A++   N +P +    S N       V    ++  G+  S   KT++C K++    C 
Sbjct: 66  -NAVAHMMNLTPAAPPPPSRN-------VAALPHVPNGSAPSAV-KTRICNKFNTAEGCK 116

Query: 249 FGEDCHFAHGEGEL 262
           FG+ CHFAHGE EL
Sbjct: 117 FGDKCHFAHGEWEL 130


>Glyma03g30030.1 
          Length = 295

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)

Query: 147 IIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRESSAISIGTNGSPKSYGDG 206
           +  K K C K+++   CP+GE C FLH  PG +          +A++   N +P +    
Sbjct: 33  VGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGY----------NAVAHMMNLTPAAPLPP 82

Query: 207 SNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCPFGEDCHFAHGEGEL 262
           + N       V    ++  G+  S   KT++C K++    C FG+ CHFAHGE EL
Sbjct: 83  TRN-------VAALPHVPNGSAPSAV-KTRICNKFNTAEGCKFGDKCHFAHGEWEL 130


>Glyma19g32910.1 
          Length = 295

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 19/116 (16%)

Query: 147 IIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRESSAISIGTNGSPKSYGDG 206
           +  K K C K+++   CP+GE C FLH  PG +          +A++   N +P      
Sbjct: 33  VGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGY----------NAVAHMMNLTPA----- 77

Query: 207 SNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCPFGEDCHFAHGEGEL 262
              +   S+ V     +  G+      KT++C K++    C FG+ CHFAHGE EL
Sbjct: 78  ---APPASRNVAALPPVPNGSAPPAV-KTRICNKFNTAEGCKFGDKCHFAHGEWEL 129


>Glyma10g41530.1 
          Length = 285

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 233 WKTKLCIKWDKTGNCPFGEDCHFAHGEGEL----QVPGGRTEVESAAVA 277
           +KT+LC KW +TG CP+G+ C FAHG GEL    + P  +TEV    +A
Sbjct: 201 FKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLA 249


>Glyma20g25710.1 
          Length = 305

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 233 WKTKLCIKWDKTGNCPFGEDCHFAHGEGELQ 263
           +KT+LC KW +TG CP+G+ C FAHG GEL+
Sbjct: 221 FKTELCNKWQETGTCPYGDHCQFAHGIGELR 251