Miyakogusa Predicted Gene

Lj4g3v0450640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450640.1 Non Chatacterized Hit- tr|J3MA39|J3MA39_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB05G3,45.59,9e-19,no
description,Rad21/Rec8-like protein, C-terminal; "Winged helix"
DNA-binding domain,NULL;
Rad21_Re,gene.Ljchr4_pseudomol_20120830.path1.gene1194.1
         (205 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g43130.1                                                       210   7e-55
Glyma14g06210.1                                                       198   3e-51

>Glyma02g43130.1 
          Length = 681

 Score =  210 bits (535), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 148/216 (68%), Gaps = 27/216 (12%)

Query: 5   DFDTRLDRQFLVPPTEKLQNNGQDTEILMDELRTNLDHGLRVPEATPQVWSGKSGGDSIH 64
           +FD+R D Q   PP EK + +     IL+DEL T+L   LR  EATP + SGK+G DS+H
Sbjct: 475 NFDSRPDYQ--APPMEKAREH-----ILLDELTTSL---LRGHEATPHISSGKAG-DSVH 523

Query: 65  SFPGSVSEHGLSSNSGGDKGRISKKRHSSSGNGSAGLKPV------AENAKFKLARVSEV 118
           SFP   SE+G +S+S  D GR   KR+SSS N S GL+P+      AE+  FKLAR+ E 
Sbjct: 524 SFPRPTSENGPASHSDFDSGRFKNKRYSSSANSSGGLEPLGGLEPLAEDVNFKLARLYED 583

Query: 119 GDPTPDQELLVETGPTQTQANIDHPNEKIGDSIQAHMKAHFSTPGAP---------AGMT 169
           G PTPDQEL VETGPTQTQANI+HP++KI DSIQA MKAHF TPGAP         AGMT
Sbjct: 584 G-PTPDQELFVETGPTQTQANINHPSDKITDSIQAQMKAHFDTPGAPPVESLHNLAAGMT 642

Query: 170 RKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG 205
           R SAAQLFY   VL + DAL+ +QK PYG+I+ SRG
Sbjct: 643 RTSAAQLFYQICVLASRDALKVDQKVPYGEIVFSRG 678


>Glyma14g06210.1 
          Length = 573

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/222 (55%), Positives = 144/222 (64%), Gaps = 29/222 (13%)

Query: 2   PYEDFDTRLDRQFLVPPTEKLQNNGQDTEILMDELRTNLDHGLRVPEATPQVWSGKSGGD 61
           P EDFD R D Q   PP EK + +     ILMDEL  +L   LR  EATPQV SGK+GG 
Sbjct: 360 PSEDFDGRPDYQ--APPMEKAREH-----ILMDELTASL---LRGHEATPQVSSGKAGG- 408

Query: 62  SIHSFPGSVSEHGLSSNSGGDKGR----ISKKRHSSSGNGSAGLKPVAENAKFKLARVSE 117
           S+HSFP   SE+G +S+S  D GR       KR+SSS N S GL+P+AE+  FKLAR+ E
Sbjct: 409 SVHSFPRPTSENGPASHSDFDSGRTVHRFKNKRYSSSANSSGGLEPLAEDVNFKLARLYE 468

Query: 118 -----VGDPTPDQELLVETGPTQTQANIDHPNEKIGDSIQAHMKAHFSTPGAP------- 165
                +       ELLVETGPTQTQ NI+HP++KI DSIQA MKAHF TPGAP       
Sbjct: 469 DVYYLLRLLYFFSELLVETGPTQTQVNINHPSDKITDSIQAQMKAHFDTPGAPPVESLHI 528

Query: 166 --AGMTRKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG 205
             AGMTR SAAQLFY   VL + DAL+ +QK PYG+IL SRG
Sbjct: 529 LAAGMTRTSAAQLFYQICVLASRDALKVDQKVPYGEILFSRG 570