Miyakogusa Predicted Gene

Lj4g3v0281060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0281060.1 Non Chatacterized Hit- tr|I3SNB2|I3SNB2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.7,3.00004e-41,no description,NULL; snRNP Sm
proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ri,CUFF.46786.1
         (87 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g25800.2                                                       170   4e-43
Glyma05g25800.1                                                       170   4e-43
Glyma08g08750.1                                                       157   3e-39
Glyma05g25800.3                                                       108   2e-24
Glyma17g07460.1                                                        50   6e-07
Glyma13g01320.1                                                        50   7e-07
Glyma06g16410.1                                                        49   1e-06
Glyma04g38600.1                                                        49   1e-06

>Glyma05g25800.2 
          Length = 87

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 85/87 (97%)

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVY NMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
          RITKLDQILLNGNNIAILVPGGSP+ E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPESE 87


>Glyma05g25800.1 
          Length = 87

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 85/87 (97%)

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVY NMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
          RITKLDQILLNGNNIAILVPGGSP+ E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPESE 87


>Glyma08g08750.1 
          Length = 101

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/78 (98%), Positives = 78/78 (100%)

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIL 78
          RITKLDQILLNGNNIAIL
Sbjct: 61 RITKLDQILLNGNNIAIL 78


>Glyma05g25800.3 
          Length = 72

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/53 (96%), Positives = 52/53 (98%)

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVY NMVLEDVTEY
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEY 53


>Glyma17g07460.1 
          Length = 88

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E 
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           I  + R+   L +ILL G+NI +++  G 
Sbjct: 61 SIKKKSRKT--LGRILLKGDNITLMMNTGK 88


>Glyma13g01320.1 
          Length = 88

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E 
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           I  + R+   L +ILL G+NI +++  G 
Sbjct: 61 NIKKKSRKT--LGRILLKGDNITLMMNTGK 88


>Glyma06g16410.1 
          Length = 88

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E 
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           +  + R+   L +ILL G+NI +++  G 
Sbjct: 61 NVKKKSRKT--LGRILLKGDNITLMMNTGK 88


>Glyma04g38600.1 
          Length = 88

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E 
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           +  + R+   L +ILL G+NI +++  G 
Sbjct: 61 NVKKKSRKT--LGRILLKGDNITLMMNTGK 88