Miyakogusa Predicted Gene

Lj3g3v2921000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2921000.1 tr|G7J219|G7J219_MEDTR Replication protein A 70
kDa DNA-binding subunit OS=Medicago truncatula
GN=MT,46.32,5e-18,seg,NULL; Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; DUF223,Domain of unknown,CUFF.44975.1
         (95 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        76   1e-14

>Glyma18g33200.1 
          Length = 126

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 6/81 (7%)

Query: 21 VTKVVRLWV------SPSFSGGKLPFSMELVLMDSKGCQIHASVRKTLVYRFHPLLTEGQ 74
          + +VV LW+      +   S  K+P SME+VL+DSKG ++H SV++T +Y+F   L EG+
Sbjct: 1  MVRVVHLWMVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGK 60

Query: 75 VYQISYFGVGDNLGDFRTTTH 95
           Y I +FGV +N G +RTT H
Sbjct: 61 WYSIQFFGVAENGGIYRTTHH 81