Miyakogusa Predicted Gene

Lj3g3v1541420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541420.1 Non Chatacterized Hit- tr|Q8S9G5|Q8S9G5_BRANA
Putative PCF11 protein OS=Brassica napus GN=pcf11
PE=2,41.73,2e-19,PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_51176_length_374_cov_76.981285.path2.1
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28050.1                                                       250   2e-67
Glyma10g39710.1                                                       245   7e-66
Glyma19g37600.1                                                        90   5e-19
Glyma03g34910.1                                                        84   3e-17
Glyma19g37610.1                                                        79   2e-15
Glyma10g07660.1                                                        78   2e-15

>Glyma20g28050.1 
          Length = 837

 Score =  250 bits (639), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 113/126 (89%), Positives = 122/126 (96%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
           MDWHVTKNRMSK RKQKPSRKWFVS+RMWLSGAEALGTESAPGFLP +T+EE+KDDEELA
Sbjct: 688 MDWHVTKNRMSKTRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEERKDDEELA 747

Query: 61  VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
           VPA+EDQNTCALCGEPFDEFYSDE EEWMYRGAVYLNAP GTTAG+DR+QLGPIIHAKCR
Sbjct: 748 VPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGTTAGMDRTQLGPIIHAKCR 807

Query: 121 SESSVA 126
           SES++A
Sbjct: 808 SESNMA 813


>Glyma10g39710.1 
          Length = 837

 Score =  245 bits (626), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 120/126 (95%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
           MDWHVTKNRMSK+RKQKPSRKWFVS+RMWLSGAEALGTESAPGFLP +T+EE KD EELA
Sbjct: 688 MDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEEMKDHEELA 747

Query: 61  VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
           VPA+EDQNTCALCGEPFDEFYSDE EEWMYRGAVYLNAP G TAG+DRSQLGPIIHAKCR
Sbjct: 748 VPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPLGITAGMDRSQLGPIIHAKCR 807

Query: 121 SESSVA 126
           SES++A
Sbjct: 808 SESNMA 813


>Glyma19g37600.1 
          Length = 831

 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 14/131 (10%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTV---EEKKDDE 57
           ++WH T+    ++   K SR W+     W++G     +ES  GF  ND+V   E+K D  
Sbjct: 702 LEWHATR----EHGPIKASRSWYAESSDWIAGKAEYSSES--GF--NDSVDVHEQKTDSS 753

Query: 58  EL--AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPII 115
           +L   V ADE+Q  C LCGE F++ Y  E  EWM++GAVY+N  +     ++   +GPII
Sbjct: 754 QLDTMVLADENQCLCVLCGELFEDAYCHERNEWMFKGAVYMNYSD-VNCEMESRNVGPII 812

Query: 116 HAKCRSESSVA 126
           HAKC SE+S+ 
Sbjct: 813 HAKCLSENSIV 823


>Glyma03g34910.1 
          Length = 754

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 14/130 (10%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVE---EKKDDE 57
           ++WH T+    ++   K SR W+     W++G     +ES   F  ND+V+   EK    
Sbjct: 627 LEWHATR----EHGPIKASRSWYAKSSDWIAGKAEYSSESE--F--NDSVDVHDEKTGSS 678

Query: 58  EL--AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPII 115
           +L   V ADE+Q  C LCGE F++ Y  E  EWM++G +Y+N  +   + ++   +GPII
Sbjct: 679 QLDTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSD-VNSEMESGNVGPII 737

Query: 116 HAKCRSESSV 125
           HAKC SE+S+
Sbjct: 738 HAKCLSENSI 747


>Glyma19g37610.1 
          Length = 975

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 10/128 (7%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDE--- 57
           ++WH  +    ++   K SR W+     W++G     +ES   F  +  +++KK D    
Sbjct: 848 LEWHAAR----EHGPIKASRSWYAKSIDWIAGRTEYSSESE--FTDSVDLQDKKIDSSQL 901

Query: 58  ELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHA 117
           +  V ADE+Q  C LCGE F++    +  EWM++GAVY+N  +     ++   +GPIIHA
Sbjct: 902 DTMVLADENQCLCVLCGELFEDVCCHDRNEWMFKGAVYMNFSD-VNCEMESRNVGPIIHA 960

Query: 118 KCRSESSV 125
           KC SE+SV
Sbjct: 961 KCLSENSV 968


>Glyma10g07660.1 
          Length = 898

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 14/134 (10%)

Query: 1   MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTV-----EEKKD 55
           + WH T  R S+      + +W++    W+ G     +E+   F   D+V     E  K 
Sbjct: 745 LKWHAT--RESEENGLISASRWYLKSNDWILGKAEYPSENE--F--TDSVDTYGKEADKS 798

Query: 56  DEELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYL-NAPNGTTAGLD--RSQLG 112
            E+  V ADE Q  C LCGE F++FY  ET EWM++GAVYL N+ + +  G+    +  G
Sbjct: 799 QEDAMVLADEKQCLCVLCGELFEDFYCQETGEWMFKGAVYLANSDSKSEMGIRDVSTGRG 858

Query: 113 PIIHAKCRSESSVA 126
           PIIHA C S++SV+
Sbjct: 859 PIIHASCLSDNSVS 872