Miyakogusa Predicted Gene

Lj3g3v1507280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1507280.1 tr|B6TB66|B6TB66_MAIZE 50S ribosomal protein L1
OS=Zea mays PE=2 SV=1,41.1,2e-18,no description,Ribosomal protein L1,
2-layer alpha/beta-sandwich; seg,NULL; Ribosomal protein
L1,Rib,CUFF.42713.1
         (234 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g15450.1                                                       188   4e-48
Glyma06g42860.1                                                       181   8e-46
Glyma09g36120.1                                                        49   4e-06
Glyma12g01210.1                                                        49   4e-06

>Glyma12g15450.1 
          Length = 408

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 115/146 (78%), Gaps = 1/146 (0%)

Query: 90  PEPQQRALTREDIRYVKDGPSITPVSYPMR-VAPLPEDMVPGQKNDXXXXXXXXIEAEDQ 148
           P   QRA TREDIRYVKDGPSI PVSY  R VAPLP+D  P    D        IEAE++
Sbjct: 88  PPDSQRAWTREDIRYVKDGPSIAPVSYSSRGVAPLPDDRAPVAAEDAVESERRMIEAENE 147

Query: 149 LRARMVRAVEDEKMKVPFPLLIRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEAHIRL 208
           +R RM +A EDE+MKVPFPLLI+PK+ EKPP LDL EAIRQVK NAKAKFDET+EAHIRL
Sbjct: 148 MRMRMAKAAEDERMKVPFPLLIKPKKNEKPPPLDLNEAIRQVKTNAKAKFDETVEAHIRL 207

Query: 209 GIESKRTELAVRGTVILPHGAPKVIC 234
           G++SKRTE+AVRGTVILPHGAPK + 
Sbjct: 208 GVDSKRTEMAVRGTVILPHGAPKAVS 233


>Glyma06g42860.1 
          Length = 399

 Score =  181 bits (458), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 116/143 (81%), Gaps = 4/143 (2%)

Query: 93  QQRALTREDIRYVKDGPSITPVSYPMR--VAPLPEDMVPGQKNDXXXXXXXXIEAEDQLR 150
            QRA TREDIRYVKD PSI PV+Y  R  VAPLP+D  P +  D        IEAE+++R
Sbjct: 83  SQRAWTREDIRYVKDVPSIAPVAYASRGGVAPLPDDRAPVE--DAAESERRMIEAENEMR 140

Query: 151 ARMVRAVEDEKMKVPFPLLIRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEAHIRLGI 210
            RM +AVE+E+MKVPFPLLI+PK+ EKPP LDL EAIRQVKANAKAKFDET+EAHIRLG+
Sbjct: 141 LRMAKAVEEERMKVPFPLLIKPKKNEKPPPLDLNEAIRQVKANAKAKFDETVEAHIRLGV 200

Query: 211 ESKRTELAVRGTVILPHGAPKVI 233
           +SKRTE+AVRGTVILPHGAPK +
Sbjct: 201 DSKRTEMAVRGTVILPHGAPKAV 223


>Glyma09g36120.1 
          Length = 345

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 170 IRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGA 229
           +R ++KE     DL  AI  VK  AK KF ET+EAH RL I+ K  +  +R TV LP G 
Sbjct: 122 LRERKKE----YDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGT 177

Query: 230 PK 231
            K
Sbjct: 178 GK 179


>Glyma12g01210.1 
          Length = 340

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 170 IRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGA 229
           +R ++KE     DL  AI  VK  AK KF ET+EAH RL I+ K  +  +R TV LP G 
Sbjct: 117 LRERKKE----YDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGT 172

Query: 230 PK 231
            K
Sbjct: 173 GK 174