Miyakogusa Predicted Gene

Lj3g3v0044280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0044280.1 Non Chatacterized Hit- tr|C6T351|C6T351_SOYBN
Uncharacterized protein OS=Glycine max PE=2 SV=1,54.4,2e-17,
,CUFF.40238.1
         (116 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g00940.1                                                        93   5e-20
Glyma13g44320.1                                                        74   3e-14
Glyma15g00940.3                                                        47   5e-06

>Glyma15g00940.1 
          Length = 120

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 77/125 (61%), Gaps = 23/125 (18%)

Query: 4   SVVGGGWRFLCHRRENP--PNSPLFLQSPMPIRFSTTTTSWSCVIPRARDPKTGEQNSTN 61
           S +G  WR LC R  NP  PN+PLFLQ P   RF+ +    S V+ RA DPKT       
Sbjct: 7   SEIGWSWRVLCQR-VNPAIPNTPLFLQIPKSTRFTGS----SSVVARAWDPKTA------ 55

Query: 62  TSQVEDLVYVAKLAAGSFVGAG----------EITTPNLVLALSIILTPVVVAVLLLIKE 111
           +SQ EDLVYV KL AGSF G            EITTPNLVLAL +ILTPV+VAV LLIKE
Sbjct: 56  SSQEEDLVYVGKLVAGSFAGGAAIKYGSALFPEITTPNLVLALLLILTPVLVAVFLLIKE 115

Query: 112 SLSKP 116
           S + P
Sbjct: 116 SRTNP 120


>Glyma13g44320.1 
          Length = 86

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 50/73 (68%), Gaps = 11/73 (15%)

Query: 54  TGEQNSTNTSQVEDLVYVAKLAAGSFVGAG----------EITTPNLVLALSIILTPVVV 103
           T  QN T++SQ EDLVYV KL AGSF G            EITTPNLV+AL +ILTPV+V
Sbjct: 15  TEHQNYTSSSQ-EDLVYVGKLVAGSFAGGAAIKYGSALFPEITTPNLVVALLLILTPVLV 73

Query: 104 AVLLLIKESLSKP 116
           AV LLIKES + P
Sbjct: 74  AVFLLIKESRTNP 86


>Glyma15g00940.3 
          Length = 63

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 4  SVVGGGWRFLCHRRENP--PNSPLFLQSPMPIRFSTTTTSWSCVIPRARDPKTGEQNST 60
          S +G  WR LC R  NP  PN+PLFLQ P   RF+ +++    V+ RA DPKT     T
Sbjct: 7  SEIGWSWRVLCQR-VNPAIPNTPLFLQIPKSTRFTGSSS----VVARAWDPKTASSQCT 60