Miyakogusa Predicted Gene

Lj2g3v1718710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1718710.1 tr|A0FK50|A0FK50_CHLRE Chloroplast Rat1
OS=Chlamydomonas reinhardtii GN=RAT1 PE=4
SV=1,38.84,3e-19,UNCHARACTERIZED,Coiled-coil domain-containing protein
90; UNCHARACTERIZED,NULL; coiled-coil,NULL; DU,CUFF.37723.1
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g17170.2                                                       251   1e-67
Glyma16g24320.1                                                       251   2e-67
Glyma17g17170.1                                                       243   2e-65

>Glyma17g17170.2 
          Length = 261

 Score =  251 bits (641), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/129 (93%), Positives = 127/129 (98%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+ EM+QE+NLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELR+EIDKVTAGQR
Sbjct: 133 MQKIEMMQESNLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRHEIDKVTAGQR 192

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLERGRIREEL+NQNAETNNLTNKLDREIH+LRA LEAAKYDVIKYCIGTLVSISAV
Sbjct: 193 LDLNLERGRIREELSNQNAETNNLTNKLDREIHSLRAQLEAAKYDVIKYCIGTLVSISAV 252

Query: 121 GLAVLRILM 129
           GLAVLRILM
Sbjct: 253 GLAVLRILM 261


>Glyma16g24320.1 
          Length = 236

 Score =  251 bits (640), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/129 (93%), Positives = 127/129 (98%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+ EM+QE+NLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMR+ELRYEIDKVTAGQR
Sbjct: 108 MQKIEMMQESNLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRNELRYEIDKVTAGQR 167

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLERGRIREEL+NQNAETNNLTNKLDREIH+LRA LEAAKYDVIKYCIGTLVSISAV
Sbjct: 168 LDLNLERGRIREELSNQNAETNNLTNKLDREIHSLRAQLEAAKYDVIKYCIGTLVSISAV 227

Query: 121 GLAVLRILM 129
           GLAVLRILM
Sbjct: 228 GLAVLRILM 236


>Glyma17g17170.1 
          Length = 269

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/137 (88%), Positives = 127/137 (92%), Gaps = 8/137 (5%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+ EM+QE+NLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELR+EIDKVTAGQR
Sbjct: 133 MQKIEMMQESNLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRHEIDKVTAGQR 192

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDR--------EIHALRAHLEAAKYDVIKYCIG 112
           LDLNLERGRIREEL+NQNAETNNLTNKLDR        EIH+LRA LEAAKYDVIKYCIG
Sbjct: 193 LDLNLERGRIREELSNQNAETNNLTNKLDRVSNYGSVWEIHSLRAQLEAAKYDVIKYCIG 252

Query: 113 TLVSISAVGLAVLRILM 129
           TLVSISAVGLAVLRILM
Sbjct: 253 TLVSISAVGLAVLRILM 269