Miyakogusa Predicted Gene
- Lj2g3v0914150.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0914150.1 tr|B9MVJ8|B9MVJ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_781481 PE=4
SV=1,25.66,2e-18,SSB,Primosome PriB/single-strand DNA-binding; no
description,Nucleic acid-binding, OB-fold; Nucleic
,NODE_55840_length_1530_cov_48.152287.path1.1
(416 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma07g15570.1 200 2e-51
Glyma01g00550.1 111 1e-24
Glyma14g21430.1 109 6e-24
Glyma10g03700.1 108 2e-23
Glyma02g16100.1 104 2e-22
Glyma02g16100.2 102 7e-22
Glyma05g14790.1 95 1e-19
Glyma10g03700.3 91 2e-18
Glyma10g03700.2 70 3e-12
Glyma14g08720.1 70 4e-12
Glyma14g08760.1 52 1e-06
>Glyma07g15570.1
Length = 309
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/298 (44%), Positives = 165/298 (55%), Gaps = 37/298 (12%)
Query: 38 LSPKPTEIPFQPKLANAVNLIGQVHSPLQFQTSP-DGNPWASTVLTRQDSPSSPFLWIPV 96
++ KP +IPFQPKLAN+VNLIG V SP+QF SP DG WASTV+TRQDS F IPV
Sbjct: 22 VTAKPNDIPFQPKLANSVNLIGHVQSPIQFHVSPNDGYVWASTVITRQDSSDLSFS-IPV 80
Query: 97 IFEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVK 156
IFEGDLAH A HL ND +HIAG+L+TD P L H QSN QVMVQ+LNFVQ YPQ
Sbjct: 81 IFEGDLAHTAKFHLNLNDCIHIAGKLTTDSPQLE-HLHPQSNIQVMVQTLNFVQRYPQPN 139
Query: 157 NISETPKQKVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKS----WKDLLNNPSEWWDVR 212
+ + P + HS S + + D S W+DLL+NP +W D R
Sbjct: 140 TTTSI------------DLKPQPQPQPEHSIPSAKKNPDSSSPSPWRDLLDNPMQWRDFR 187
Query: 213 SAKEN----PKGAAFERKTNRELVFIDSSTPKWLQEKLESMTIDLKPELKHTITSAKKDP 268
+K N PK F+RK L KW+ KLE + D+ T S K D
Sbjct: 188 ESKRNGLVKPKHPDFKRKDGYSLWL--GKDEKWVLPKLEELQFDVP-----TAISKKGDG 240
Query: 269 GSLLSSWRDLLNNPKQWFDFRDSKLNGLVNPRYPDFKCKDGSTALWLDRAPKWFLSEL 326
G SW DL+ N W+D R +K N + PDFK K+ LWLD + +W L +L
Sbjct: 241 G---ESWNDLVQNYANWWDNRLNKRNA----KAPDFKHKETGKGLWLDSSSEWVLEKL 291
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/175 (59%), Positives = 129/175 (73%), Gaps = 12/175 (6%)
Query: 248 SMTIDLKPELK----HTITSAKKDPGSLLSS-WRDLLNNPKQWFDFRDSKLNGLVNPRYP 302
+ +IDLKP+ + H+I SAKK+P S S WRDLL+NP QW DFR+SK NGLV P++P
Sbjct: 141 TTSIDLKPQPQPQPEHSIPSAKKNPDSSSPSPWRDLLDNPMQWRDFRESKRNGLVKPKHP 200
Query: 303 DFKCKDGSTALWLDRAPKWFLSELKGLKVDIPVVKTKKEKDGKGDQSWNDLVENPAKWWD 362
DFK KDG +LWL + KW L +L+ L+ D+P +KK G G +SWNDLV+N A WWD
Sbjct: 201 DFKRKDG-YSLWLGKDEKWVLPKLEELQFDVPTAISKK---GDGGESWNDLVQNYANWWD 256
Query: 363 NRLNKRNVKAPDFKHKETGVGLWVDASPNWVLPKL-PPVKLEQSVPTSSKQTLVS 416
NRLNKRN KAPDFKHKETG GLW+D+S WVL KL PP+K +QSV T ++TLVS
Sbjct: 257 NRLNKRNAKAPDFKHKETGKGLWLDSSSEWVLEKLPPPLKPKQSVDT--ERTLVS 309
>Glyma01g00550.1
Length = 223
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 14/129 (10%)
Query: 248 SMTIDLKPEL----KHTIT----SAKKDPGSLLSS-WRDLLNNPKQWFDFRDSKLNGLVN 298
+++I+LKPE KH+I SAK++ S SS WRDL++NP W DFR+SK NGLV
Sbjct: 74 NISINLKPEPEPEPKHSIRKYTPSAKRNRDSSSSSPWRDLVDNPMHWRDFRESKRNGLVK 133
Query: 299 PRYPDFKCKDGSTALWLDRAPKWFLSELKGLKVDIPVVKTKKEKDGKGDQSWNDLVENPA 358
PR+PDFK KDG +LWL + + L +LKGL+ D+P +KK G +SWNDLV+NP
Sbjct: 134 PRHPDFKRKDGH-SLWLSKDNERVLPKLKGLQFDVPDSISKK----GGGESWNDLVQNPD 188
Query: 359 KWWDNRLNK 367
WWDNRLNK
Sbjct: 189 NWWDNRLNK 197
>Glyma14g21430.1
Length = 180
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 25/147 (17%)
Query: 288 FRDSKLNGLVNPRYPDFKCKDGSTALWLDRAPKWFLSELKGLKVD------IPVVKTKKE 341
FR ++ NGL +PDFK KDG + WL + KW L +L+GL+ D ++++K
Sbjct: 41 FRINQCNGL----HPDFKRKDG-YSFWLGKDEKWVLPKLEGLQFDNQELSKFQRIRSQKA 95
Query: 342 -----KDGKGDQS------WNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVDASP 390
+D + D +DLV+N A WWDNRLNKRN KAPDFKHKET GLW+D+S
Sbjct: 96 SRIKIQDSREDSIKISHLIQHDLVQNYANWWDNRLNKRNAKAPDFKHKETSKGLWLDSSS 155
Query: 391 NWVLPKL-PPVKLEQSVPTSSKQTLVS 416
WVL KL PP+K +QSV T ++TLVS
Sbjct: 156 KWVLEKLPPPMKPKQSVDT--ERTLVS 180
>Glyma10g03700.1
Length = 292
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 20/215 (9%)
Query: 40 PKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGN--PWASTVLTRQDSPSSPFLWIPVI 97
PKP+EIP+Q +L N+VNLIG V +P++ + P G W + + + SSP I +
Sbjct: 66 PKPSEIPWQKELCNSVNLIGNVAAPVEIKYLPSGKVVAWTRLYVKKSATQSSP---INLT 122
Query: 98 FEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKN 157
F DLAH A HL+ +H++G+L TD +Q+ ++V+VQ LNF++ +N
Sbjct: 123 FWDDLAHVASQHLQKGHQIHVSGRLITDTVETE-EGKSQTYYKVVVQQLNFIE-----RN 176
Query: 158 ISETPKQKVVSVSETEE--HGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSAK 215
S VS S+ +E + + + + + + ++W NP EWWD R+ K
Sbjct: 177 FSS------VSSSQGQEFDFAMAGSGRKVSNAANSTGSVVETWNAFFANPGEWWDNRNNK 230
Query: 216 ENPKGAAFERKTNRELVFIDSS-TPKWLQEKLESM 249
NPK F+ K E ++I+ P W++ +LE +
Sbjct: 231 RNPKAPDFKHKDTGEALWIEGRYNPPWVKSQLEIL 265
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 336 VKTKKEKDGKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVDA--SPNWV 393
V G ++WN NP +WWDNR NKRN KAPDFKHK+TG LW++ +P WV
Sbjct: 199 VSNAANSTGSVVETWNAFFANPGEWWDNRNNKRNPKAPDFKHKDTGEALWIEGRYNPPWV 258
Query: 394 LPKL 397
+L
Sbjct: 259 KSQL 262
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 261 ITSAKKDPGSLLSSWRDLLNNPKQWFDFRDSKLNGLVNPRYPDFKCKDGSTALWLD--RA 318
+++A GS++ +W NP +W+D R++K NP+ PDFK KD ALW++
Sbjct: 199 VSNAANSTGSVVETWNAFFANPGEWWDNRNNKR----NPKAPDFKHKDTGEALWIEGRYN 254
Query: 319 PKWFLSELKGL 329
P W S+L+ L
Sbjct: 255 PPWVKSQLEIL 265
>Glyma02g16100.1
Length = 284
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 37 PLSPKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGN--PWASTVLTRQDSPSSPFLWI 94
P PKP+EIP+Q +L N+VNLIG V +P++ + P G W + + + SS I
Sbjct: 55 PSYPKPSEIPWQKELCNSVNLIGNVAAPVEIKHLPSGKVVAWTRLCVKKSATQSSS---I 111
Query: 95 PVIFEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQ 154
+ F DLAH A HL+ +H++G+L D Q+ ++V+ Q LNF++
Sbjct: 112 SLTFWDDLAHVASQHLQKGYQIHVSGRLIIDTVETE-EGKTQTYYKVVAQQLNFIE---- 166
Query: 155 VKNISETPKQKVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSA 214
+N S + G + +++S S + +SW NP EWWD R+
Sbjct: 167 -RNFSSASSSQGQEFDFAMAGGGRKVSNAVNSTGS----VVESWNAFFANPGEWWDNRNN 221
Query: 215 KENPKGAAFERKTNRELVFIDSS-TPKWLQEKLESM 249
K NPK F+ K E ++I+ +P W++ +LE +
Sbjct: 222 KRNPKAPDFKHKDTGEALWIEGRYSPPWVKSQLEIL 257
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 344 GKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVDA--SPNWVLPKL 397
G +SWN NP +WWDNR NKRN KAPDFKHK+TG LW++ SP WV +L
Sbjct: 199 GSVVESWNAFFANPGEWWDNRNNKRNPKAPDFKHKDTGEALWIEGRYSPPWVKSQL 254
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 261 ITSAKKDPGSLLSSWRDLLNNPKQWFDFRDSKLNGLVNPRYPDFKCKDGSTALWLD--RA 318
+++A GS++ SW NP +W+D R++K NP+ PDFK KD ALW++ +
Sbjct: 191 VSNAVNSTGSVVESWNAFFANPGEWWDNRNNKR----NPKAPDFKHKDTGEALWIEGRYS 246
Query: 319 PKWFLSELKGL 329
P W S+L+ L
Sbjct: 247 PPWVKSQLEIL 257
>Glyma02g16100.2
Length = 283
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 17/216 (7%)
Query: 37 PLSPKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGN--PWASTVLTRQDSPSSPFLWI 94
P PKP+EIP+Q +L N+VNLIG V +P++ + P G W + + + SS I
Sbjct: 55 PSYPKPSEIPWQKELCNSVNLIGNVAAPVEIKHLPSGKVVAWTRLCVKKSATQSSS---I 111
Query: 95 PVIFEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQ 154
+ F DLAH A HL+ +H++G+L D Q+ ++V+ Q LNF++
Sbjct: 112 SLTFWDDLAHVASQHLQKGYQIHVSGRLIIDTVETE-EGKTQTYYKVVAQQLNFIE---- 166
Query: 155 VKNISETPKQKVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSA 214
+N S + G + + + + + +SW NP EWWD R+
Sbjct: 167 -RNFSSASSSQGQEFDFAMAGG-----RKVSNAVNSTGSVVESWNAFFANPGEWWDNRNN 220
Query: 215 KENPKGAAFERKTNRELVFIDSS-TPKWLQEKLESM 249
K NPK F+ K E ++I+ +P W++ +LE +
Sbjct: 221 KRNPKAPDFKHKDTGEALWIEGRYSPPWVKSQLEIL 256
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 324 SELKGLKVDIPVVKTKKEKD-----GKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHK 378
S +G + D + +K + G +SWN NP +WWDNR NKRN KAPDFKHK
Sbjct: 173 SSSQGQEFDFAMAGGRKVSNAVNSTGSVVESWNAFFANPGEWWDNRNNKRNPKAPDFKHK 232
Query: 379 ETGVGLWVDA--SPNWVLPKL 397
+TG LW++ SP WV +L
Sbjct: 233 DTGEALWIEGRYSPPWVKSQL 253
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 216 ENPKGAAFERKTNRELVFIDSSTPKWLQEKLESMTIDLKPELKHTITSAKKDPGSLLSSW 275
E K + + ++L FI+ + + D +++A GS++ SW
Sbjct: 147 EEGKTQTYYKVVAQQLNFIERNFSS--ASSSQGQEFDFAMAGGRKVSNAVNSTGSVVESW 204
Query: 276 RDLLNNPKQWFDFRDSKLNGLVNPRYPDFKCKDGSTALWLD--RAPKWFLSELKGL 329
NP +W+D R++K NP+ PDFK KD ALW++ +P W S+L+ L
Sbjct: 205 NAFFANPGEWWDNRNNKR----NPKAPDFKHKDTGEALWIEGRYSPPWVKSQLEIL 256
>Glyma05g14790.1
Length = 274
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%), Gaps = 3/74 (4%)
Query: 344 GKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVDASPNWVLPKL-PPVKL 402
G G + NDLV+N A WWDNRLNKRN KAPDFKHKETG GLW+D+S WVL KL PP+K
Sbjct: 203 GDGGEPCNDLVQNYANWWDNRLNKRNAKAPDFKHKETGKGLWLDSSSEWVLEKLPPPLKP 262
Query: 403 EQSVPTSSKQTLVS 416
+QSV T ++TLVS
Sbjct: 263 KQSVDT--ERTLVS 274
>Glyma10g03700.3
Length = 239
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 19/180 (10%)
Query: 40 PKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGN--PWASTVLTRQDSPSSPFLWIPVI 97
PKP+EIP+Q +L N+VNLIG V +P++ + P G W + + + SSP I +
Sbjct: 66 PKPSEIPWQKELCNSVNLIGNVAAPVEIKYLPSGKVVAWTRLYVKKSATQSSP---INLT 122
Query: 98 FEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKN 157
F DLAH A HL+ +H++G+L TD +Q+ ++V+VQ LNF++ +N
Sbjct: 123 FWDDLAHVASQHLQKGHQIHVSGRLITDTVETE-EGKSQTYYKVVVQQLNFIE-----RN 176
Query: 158 ISETPKQKVVSVSETEE--HGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSAK 215
S VS S+ +E + + + + + + ++W NP EWWD R+ K
Sbjct: 177 FSS------VSSSQGQEFDFAMAGSGRKVSNAANSTGSVVETWNAFFANPGEWWDNRNNK 230
>Glyma10g03700.2
Length = 173
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 40 PKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGN--PWASTVLTRQDSPSSPFLWIPVI 97
PKP+EIP+Q +L N+VNLIG V +P++ + P G W + + + SSP I +
Sbjct: 66 PKPSEIPWQKELCNSVNLIGNVAAPVEIKYLPSGKVVAWTRLYVKKSATQSSP---INLT 122
Query: 98 FEGDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFV 149
F DLAH A HL+ +H++G+L TD +Q+ ++V V + N++
Sbjct: 123 FWDDLAHVASQHLQKGHQIHVSGRLITDTVETE-EGKSQTYYKVFVTAANWL 173
>Glyma14g08720.1
Length = 245
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 41 KPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGNPWASTVLT--RQDSPSSPFLWIPVIF 98
+P I + P L N + IG V S G TVL + + +S F + ++
Sbjct: 13 RPPTIRWSPHLENTASFIGTVAREPTRVNSTTGKFGVYTVLKVPKSNQSNSSFFRLLLMM 72
Query: 99 EGDLAHAAVSHLKPNDVVHIAGQL-STDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKN 157
++A A HLK ND++H+ G L S P NG + N+++ V+ FV ++
Sbjct: 73 RNNVAKLASEHLKSNDLIHVLGSLGSFTKPDANG--ILRLNYKLEVKEFEFV-----AQS 125
Query: 158 ISETPKQKVVSVSETEEHGVNPWT---------------KSIHSKQSEEHDIDKSWKDLL 202
+K+ SV G+ W +H Q+ H W+
Sbjct: 126 SGYLGDKKLESVE-----GMFCWLLFFILFFYRQMLVSDAGMHKNQNRLH----LWQVFF 176
Query: 203 NNPSEWWDVRSAKENPKGAAFERKTNRELVFIDSSTPKWLQEKLE 247
+NP+EWWD R +K NPK F+ K E +++ P W++ +L+
Sbjct: 177 SNPNEWWDQRKSKRNPKQPDFKHKDTGEALWLSEYDPPWVKRQLQ 221
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 321 WFLSELKGLKVDIPVVKTKKEKDGKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHKET 380
W L + + V K+ W NP +WWD R +KRN K PDFKHK+T
Sbjct: 143 WLLFFILFFYRQMLVSDAGMHKNQNRLHLWQVFFSNPNEWWDQRKSKRNPKQPDFKHKDT 202
Query: 381 GVGLWV-DASPNWVLPKL 397
G LW+ + P WV +L
Sbjct: 203 GEALWLSEYDPPWVKRQL 220
>Glyma14g08760.1
Length = 133
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 350 WNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWV-DASPNWVLPKLPPVKLEQSVPT 408
W NP +WWD R +KRN K PDFKHK+TG LW+ + P WV +L + + +
Sbjct: 60 WQVFFSNPNEWWDQRKSKRNPKQPDFKHKDTGEALWLSEYDPPWVKRQLQLFDSKIAGGS 119
Query: 409 SSKQTLVS 416
+ +++ V+
Sbjct: 120 AGRRSRVT 127