Miyakogusa Predicted Gene

Lj2g3v0878890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0878890.1 tr|B9H976|B9H976_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1080900 PE=4 SV=1,62.9,7e-16,
,NODE_91793_length_285_cov_7.677193.path1.1
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g01000.1                                                       102   1e-22
Glyma01g01000.2                                                       102   1e-22
Glyma19g39080.1                                                        52   1e-07
Glyma03g36430.1                                                        52   1e-07
Glyma10g11100.1                                                        51   4e-07

>Glyma01g01000.1 
          Length = 708

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query: 1   MSGEDGDKILKSTGAPVAKDDWQGSQDAPTYRIGPGPGILHLNYTGQDIIATIQNVIGVI 60
           +S  DG+KI++S G PVA+DDWQGS+DAP YR+GPGPGIL+L+Y GQD+IATIQNVIGVI
Sbjct: 273 VSAADGEKIMRSIGGPVAEDDWQGSKDAPIYRLGPGPGILNLSYKGQDVIATIQNVIGVI 332

Query: 61  EG 62
           EG
Sbjct: 333 EG 334


>Glyma01g01000.2 
          Length = 570

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query: 1   MSGEDGDKILKSTGAPVAKDDWQGSQDAPTYRIGPGPGILHLNYTGQDIIATIQNVIGVI 60
           +S  DG+KI++S G PVA+DDWQGS+DAP YR+GPGPGIL+L+Y GQD+IATIQNVIGVI
Sbjct: 273 VSAADGEKIMRSIGGPVAEDDWQGSKDAPIYRLGPGPGILNLSYKGQDVIATIQNVIGVI 332

Query: 61  EG 62
           EG
Sbjct: 333 EG 334


>Glyma19g39080.1 
          Length = 645

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 1   MSGEDGDKILKSTGAPVAKDDWQGSQDAPTYRIGPGPGILHLNYTGQDIIATIQNVIGVI 60
           +S E  D IL S G       W+G+  +    +GPGP IL+  Y G+  +ATIQNV  VI
Sbjct: 249 LSAEVADIILSSLGGVPLPLQWRGTLKSMVRNVGPGPTILNFTYQGEKKVATIQNVFAVI 308

Query: 61  EG 62
           +G
Sbjct: 309 KG 310


>Glyma03g36430.1 
          Length = 694

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 1   MSGEDGDKILKSTGAPVAKDDWQGSQDAPTYRIGPGPGILHLNYTGQDIIATIQNVIGVI 60
           +S E  D IL S G       W+G+  +    +GPGP +L+  Y G+  +ATIQNV  VI
Sbjct: 266 LSAEVADTILSSLGGVHVPLHWRGTLRSKVRHVGPGPTLLNFTYEGEKKVATIQNVFAVI 325

Query: 61  EG 62
           +G
Sbjct: 326 KG 327


>Glyma10g11100.1 
          Length = 704

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1   MSGEDGDKILKSTGAPVAKDDWQGS-QDAPTYRIGPGPGILHLNYTGQDIIATIQNVIGV 59
           +S E  ++IL+S G      DW+G+ + +    +GPGP IL+  Y G+  +ATI+NV  +
Sbjct: 265 LSAEAAERILESLGGAPLPLDWRGTLKSSKVKNVGPGPTILNFTYQGELKVATIENVFAI 324

Query: 60  IEG 62
           I+G
Sbjct: 325 IKG 327