Miyakogusa Predicted Gene
- Lj2g3v0834810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0834810.1 Non Chatacterized Hit- tr|H9WD81|H9WD81_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,54.93,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; DUF1675,Protein of unknown function DUF16,CUFF.35534.1
(488 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma01g34820.1 775 0.0
Glyma09g32660.3 717 0.0
Glyma09g32660.1 717 0.0
Glyma09g32660.2 635 0.0
Glyma08g03960.1 98 2e-20
Glyma08g27010.1 71 3e-12
Glyma18g50240.1 70 4e-12
Glyma06g22210.2 70 7e-12
Glyma06g22210.3 70 8e-12
Glyma06g22210.1 70 8e-12
Glyma04g32390.1 69 8e-12
Glyma02g13120.1 69 1e-11
Glyma01g07390.1 68 3e-11
Glyma16g12800.1 66 7e-11
Glyma03g20380.1 66 1e-10
>Glyma01g34820.1
Length = 495
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/491 (77%), Positives = 422/491 (85%), Gaps = 5/491 (1%)
Query: 1 MEDDXXXXXXXXXXXXXXXVKPKNKNGSSLDLRAEEVGKGNKMADDFKSIFDT--DKPDS 58
MED+ KPK KNGSS D RAEEVG+G KM DDFKS+FD KP+S
Sbjct: 1 MEDESGLELSLGLSFGGSSAKPKGKNGSSSDTRAEEVGRGGKMVDDFKSMFDNVPQKPES 60
Query: 59 ITGTRRNESSKPEENFFSDLSKVKEDNTSLNLNARGFLGANSSRPIEIEEDKRLETVSKR 118
ITGTRR +S KPEENFFSDLSK KEDN SLNLN RGFL ANS++P+EIEEDKR E +KR
Sbjct: 61 ITGTRRTDSPKPEENFFSDLSKAKEDNASLNLNGRGFLVANSNKPVEIEEDKRSEAANKR 120
Query: 119 KISFDEIRNQKKHDSDVHHTDLHDRTRTSHISVTEDGSTAENEDVADSEAENSTSRPLSH 178
K+ FDEIR+QKKHDSDVH DLHDR R SHIS+TE+GSTAENEDVADSE ENSTSRP+SH
Sbjct: 121 KMPFDEIRDQKKHDSDVH-ADLHDRARASHISITEEGSTAENEDVADSETENSTSRPISH 179
Query: 179 HSDGSKGFIRVGATSDAPKEVRGVADSNATDFNGQKRFIGSSEKDFKHANMTYGASFSVQ 238
HSDGSKGFIRV A+SDA KE+RG ADSNATDF+GQKRF GSSEKDFKHANMTYGASFSVQ
Sbjct: 180 HSDGSKGFIRVSASSDAAKEIRGSADSNATDFSGQKRFTGSSEKDFKHANMTYGASFSVQ 239
Query: 239 PIN-MNMPYPSPVKESNSVGAPSPQIPGMMHMMSTATGDRTGAQSVNNGNLPAMFGYPPV 297
P+N MN+PYPS VKES+SVGAPSPQIPG+MH+M TATG+ GAQSV+NGNLP MFGY PV
Sbjct: 240 PVNTMNVPYPS-VKESSSVGAPSPQIPGVMHVMPTATGEHLGAQSVSNGNLPVMFGYSPV 298
Query: 298 QLPMLDKDSSWGLGSRPQQLHPSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGDG 357
QLPML+KD+SWGL SRPQQLHPSFVGRGP N A+L ++SNNISEA+PYEGRPLER KGDG
Sbjct: 299 QLPMLEKDNSWGLVSRPQQLHPSFVGRGPINSAALQVISNNISEAMPYEGRPLERTKGDG 358
Query: 358 KQRVTEDGSSSQHEDVKGSSTNLRAKDVSDQPKGEGSAVDFSNIKPGLAADVKFGGGGSY 417
KQRV E+GSSSQ EDVK STNLRAKDVS Q GEG+ +DFSNIKPGLAADVKFGG GSY
Sbjct: 359 KQRVNEEGSSSQPEDVKARSTNLRAKDVSGQSTGEGAIIDFSNIKPGLAADVKFGGCGSY 418
Query: 418 PNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEGN 477
PNLPWVSTSGSGPNGRTISGVTY+YS+NQ+RIVCACHG+H+TPEEFVRHA++D+A EGN
Sbjct: 419 PNLPWVSTSGSGPNGRTISGVTYKYSTNQVRIVCACHGSHMTPEEFVRHANEDQAAAEGN 478
Query: 478 AVLGSVPNGQP 488
AVLG+V NG P
Sbjct: 479 AVLGTVANGNP 489
>Glyma09g32660.3
Length = 479
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/492 (72%), Positives = 401/492 (81%), Gaps = 23/492 (4%)
Query: 1 MEDDXXXXXXXXXXXXXXXVKPKNKNGSSLDLRAEEVGKGNKMADDFKSIFDT--DKPDS 58
MED+ KPK KNGSS D R EEVG+G KM DDFKS+FD KP+S
Sbjct: 1 MEDESGLELSLGLSFGGSSAKPKGKNGSSSDARDEEVGRGGKMVDDFKSMFDNVPQKPES 60
Query: 59 ITGTRRNESSKPEENFFSDLSKVKEDNTSLNLNARGFLGANSSRPIEIEEDKRLETVSKR 118
ITGTR +S KPEENFFSDLSK KEDN SLNLN RGFL AN ++P+EIEEDKR E +KR
Sbjct: 61 ITGTRTTDSPKPEENFFSDLSKAKEDNASLNLNERGFLVANINKPVEIEEDKRSEAANKR 120
Query: 119 KISFDEIRNQKKHDSDVHHTDLHDRTRTSHISVTEDGSTAENEDVADSEAENSTSRPLSH 178
K+ FDEI R SHIS+TEDGSTAENEDVADSE EN TSRP+SH
Sbjct: 121 KMPFDEI------------------PRASHISITEDGSTAENEDVADSETENPTSRPISH 162
Query: 179 HSDGSKGFIRVGATSDAPKEVRGVADSNATDFNGQKRFIGSSEKDFKHANMTYGASFSVQ 238
HSDGSKGFIRV A+SDA KEVRG ADSNATD +GQKRF GSSEKDFKHA MTYGASFSVQ
Sbjct: 163 HSDGSKGFIRVSASSDAAKEVRGSADSNATDLSGQKRFTGSSEKDFKHAGMTYGASFSVQ 222
Query: 239 PINM-NMPYPSPVKESNSVGAPSPQIPGMMHMMSTA-TGDRTGAQSVNNGNLPAMFGYPP 296
P+NM N+PYPS VKES+SVG PSPQIPG+MH+M TA TG+R+GAQSV+NG+LP MFGY P
Sbjct: 223 PVNMLNVPYPS-VKESSSVGVPSPQIPGVMHVMPTAATGERSGAQSVSNGSLPVMFGYSP 281
Query: 297 VQLPMLDKDSSWGLGSRPQQLHPSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGD 356
VQLPML+KD+SWGL SRPQQLHPSFVGRGPTN A+L ++SNNISEA+PYEGRPLER KGD
Sbjct: 282 VQLPMLEKDNSWGLVSRPQQLHPSFVGRGPTNSAALQVISNNISEAMPYEGRPLERTKGD 341
Query: 357 GKQRVTEDGSSSQHEDVKGSSTNLRAKDVSDQPKGEGSAVDFSNIKPGLAADVKFGGGGS 416
GKQRVTE+GSSSQ EDVK STNLRAKD SD+ GEG+ +DFSNIKPGLAADVKFGG GS
Sbjct: 342 GKQRVTEEGSSSQSEDVKAISTNLRAKDASDKSTGEGAIIDFSNIKPGLAADVKFGGCGS 401
Query: 417 YPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEG 476
YPNLPWVSTSGSGPNGRTISGVTY+Y +NQ+RIVCACHG+H+TPEEFVRH+++D+A EG
Sbjct: 402 YPNLPWVSTSGSGPNGRTISGVTYKYGTNQVRIVCACHGSHMTPEEFVRHSNEDQAAAEG 461
Query: 477 NAVLGSVPNGQP 488
N VLG+V NG P
Sbjct: 462 NTVLGTVANGNP 473
>Glyma09g32660.1
Length = 479
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/492 (72%), Positives = 401/492 (81%), Gaps = 23/492 (4%)
Query: 1 MEDDXXXXXXXXXXXXXXXVKPKNKNGSSLDLRAEEVGKGNKMADDFKSIFDT--DKPDS 58
MED+ KPK KNGSS D R EEVG+G KM DDFKS+FD KP+S
Sbjct: 1 MEDESGLELSLGLSFGGSSAKPKGKNGSSSDARDEEVGRGGKMVDDFKSMFDNVPQKPES 60
Query: 59 ITGTRRNESSKPEENFFSDLSKVKEDNTSLNLNARGFLGANSSRPIEIEEDKRLETVSKR 118
ITGTR +S KPEENFFSDLSK KEDN SLNLN RGFL AN ++P+EIEEDKR E +KR
Sbjct: 61 ITGTRTTDSPKPEENFFSDLSKAKEDNASLNLNERGFLVANINKPVEIEEDKRSEAANKR 120
Query: 119 KISFDEIRNQKKHDSDVHHTDLHDRTRTSHISVTEDGSTAENEDVADSEAENSTSRPLSH 178
K+ FDEI R SHIS+TEDGSTAENEDVADSE EN TSRP+SH
Sbjct: 121 KMPFDEI------------------PRASHISITEDGSTAENEDVADSETENPTSRPISH 162
Query: 179 HSDGSKGFIRVGATSDAPKEVRGVADSNATDFNGQKRFIGSSEKDFKHANMTYGASFSVQ 238
HSDGSKGFIRV A+SDA KEVRG ADSNATD +GQKRF GSSEKDFKHA MTYGASFSVQ
Sbjct: 163 HSDGSKGFIRVSASSDAAKEVRGSADSNATDLSGQKRFTGSSEKDFKHAGMTYGASFSVQ 222
Query: 239 PINM-NMPYPSPVKESNSVGAPSPQIPGMMHMMSTA-TGDRTGAQSVNNGNLPAMFGYPP 296
P+NM N+PYPS VKES+SVG PSPQIPG+MH+M TA TG+R+GAQSV+NG+LP MFGY P
Sbjct: 223 PVNMLNVPYPS-VKESSSVGVPSPQIPGVMHVMPTAATGERSGAQSVSNGSLPVMFGYSP 281
Query: 297 VQLPMLDKDSSWGLGSRPQQLHPSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGD 356
VQLPML+KD+SWGL SRPQQLHPSFVGRGPTN A+L ++SNNISEA+PYEGRPLER KGD
Sbjct: 282 VQLPMLEKDNSWGLVSRPQQLHPSFVGRGPTNSAALQVISNNISEAMPYEGRPLERTKGD 341
Query: 357 GKQRVTEDGSSSQHEDVKGSSTNLRAKDVSDQPKGEGSAVDFSNIKPGLAADVKFGGGGS 416
GKQRVTE+GSSSQ EDVK STNLRAKD SD+ GEG+ +DFSNIKPGLAADVKFGG GS
Sbjct: 342 GKQRVTEEGSSSQSEDVKAISTNLRAKDASDKSTGEGAIIDFSNIKPGLAADVKFGGCGS 401
Query: 417 YPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEG 476
YPNLPWVSTSGSGPNGRTISGVTY+Y +NQ+RIVCACHG+H+TPEEFVRH+++D+A EG
Sbjct: 402 YPNLPWVSTSGSGPNGRTISGVTYKYGTNQVRIVCACHGSHMTPEEFVRHSNEDQAAAEG 461
Query: 477 NAVLGSVPNGQP 488
N VLG+V NG P
Sbjct: 462 NTVLGTVANGNP 473
>Glyma09g32660.2
Length = 445
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/492 (66%), Positives = 369/492 (75%), Gaps = 57/492 (11%)
Query: 1 MEDDXXXXXXXXXXXXXXXVKPKNKNGSSLDLRAEEVGKGNKMADDFKSIFDT--DKPDS 58
MED+ KPK KNGSS D R EEVG+G KM DDFKS+FD KP+S
Sbjct: 1 MEDESGLELSLGLSFGGSSAKPKGKNGSSSDARDEEVGRGGKMVDDFKSMFDNVPQKPES 60
Query: 59 ITGTRRNESSKPEENFFSDLSKVKEDNTSLNLNARGFLGANSSRPIEIEEDKRLETVSKR 118
ITGTR +S KPEENFFSDLSK KEDN SLNLN RGFL AN ++P+EIEEDKR E +KR
Sbjct: 61 ITGTRTTDSPKPEENFFSDLSKAKEDNASLNLNERGFLVANINKPVEIEEDKRSEAANKR 120
Query: 119 KISFDEIRNQKKHDSDVHHTDLHDRTRTSHISVTEDGSTAENEDVADSEAENSTSRPLSH 178
K+ FDEI R SHIS+TEDGSTAENEDVADSE EN TSRP+SH
Sbjct: 121 KMPFDEI------------------PRASHISITEDGSTAENEDVADSETENPTSRPISH 162
Query: 179 HSDGSKGFIRVGATSDAPKEVRGVADSNATDFNGQKRFIGSSEKDFKHANMTYGASFSVQ 238
HSDGSKGFIRV A+SDA KEVRG ADSNATD +GQKRF GSSEKDFKHA MTYGASFSVQ
Sbjct: 163 HSDGSKGFIRVSASSDAAKEVRGSADSNATDLSGQKRFTGSSEKDFKHAGMTYGASFSVQ 222
Query: 239 PINM-NMPYPSPVKESNSVGAPSPQIPGMMHMMSTA-TGDRTGAQSVNNGNLPAMFGYPP 296
P+NM N+PYPS VKES+SVG PSPQIPG+MH+M TA TG+R+GAQSV+NG+LP MFGY P
Sbjct: 223 PVNMLNVPYPS-VKESSSVGVPSPQIPGVMHVMPTAATGERSGAQSVSNGSLPVMFGYSP 281
Query: 297 VQLPMLDKDSSWGLGSRPQQLHPSFVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGD 356
VQLPML+KD+SWGL SRPQQLHPSFVGRGPTN A+L ++SNNISEA+PYEGRPLER KGD
Sbjct: 282 VQLPMLEKDNSWGLVSRPQQLHPSFVGRGPTNSAALQVISNNISEAMPYEGRPLERTKGD 341
Query: 357 GKQRVTEDGSSSQHEDVKGSSTNLRAKDVSDQPKGEGSAVDFSNIKPGLAADVKFGGGGS 416
GKQRVTE+GSSSQ EDVK STNLRAKD SD+ GEGS
Sbjct: 342 GKQRVTEEGSSSQSEDVKAISTNLRAKDASDKSTGEGS---------------------- 379
Query: 417 YPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEG 476
GPNGRTISGVTY+Y +NQ+RIVCACHG+H+TPEEFVRH+++D+A EG
Sbjct: 380 ------------GPNGRTISGVTYKYGTNQVRIVCACHGSHMTPEEFVRHSNEDQAAAEG 427
Query: 477 NAVLGSVPNGQP 488
N VLG+V NG P
Sbjct: 428 NTVLGTVANGNP 439
>Glyma08g03960.1
Length = 52
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/50 (82%), Positives = 48/50 (96%)
Query: 418 PNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
PNLPWVST+GSGP GRTISGVTYR+++NQIRIVCACHG+H+TP+EFVR A
Sbjct: 1 PNLPWVSTTGSGPTGRTISGVTYRFNTNQIRIVCACHGSHMTPKEFVRLA 50
>Glyma08g27010.1
Length = 383
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
++P VST G GPNG+ I G YRY ++RIVC CHG+ LTP EFV+HA
Sbjct: 315 DMPCVSTKGEGPNGKRIEGFLYRYGKGEEVRIVCVCHGSFLTPSEFVKHA 364
>Glyma18g50240.1
Length = 377
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 419 NLPWVSTSGSGPNGRTISGVTYRYSS-NQIRIVCACHGTHLTPEEFVRHA 467
++P VST G GPNG+ I G YRY ++RIVC CHG+ LTP EFV+HA
Sbjct: 309 DMPCVSTKGDGPNGKRIEGFLYRYGKGEEVRIVCVCHGSFLTPSEFVKHA 358
>Glyma06g22210.2
Length = 244
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 420 LPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
+P V+T+G GPNG+ I G Y+Y S Q+ IVC CHG LTP EFV HA
Sbjct: 178 MPSVTTTGDGPNGKRIEGFLYKYRSGQVCIVCVCHGNFLTPAEFVMHA 225
>Glyma06g22210.3
Length = 249
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 420 LPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
+P V+T+G GPNG+ I G Y+Y S Q+ IVC CHG LTP EFV HA
Sbjct: 183 MPSVTTTGDGPNGKRIEGFLYKYRSGQVCIVCVCHGNFLTPAEFVMHA 230
>Glyma06g22210.1
Length = 249
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 420 LPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
+P V+T+G GPNG+ I G Y+Y S Q+ IVC CHG LTP EFV HA
Sbjct: 183 MPSVTTTGDGPNGKRIEGFLYKYRSGQVCIVCVCHGNFLTPAEFVMHA 230
>Glyma04g32390.1
Length = 247
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 34/48 (70%)
Query: 420 LPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
+P V+T+G GPNG+ I G Y+Y S Q+ IVC CHG LTP EFV HA
Sbjct: 181 MPSVTTTGDGPNGKRIEGFLYKYRSGQVCIVCVCHGNFLTPAEFVMHA 228
>Glyma02g13120.1
Length = 381
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 413 GGGSYPNLPWVSTSGSGPNGRTISGVTYRY-SSNQIRIVCACHGTHLTPEEFVRHA 467
G S ++P V T G GPNGR I G+ Y+Y ++RI+C CHG L+P EFV+HA
Sbjct: 305 GTNSMEDMPCVFTKGDGPNGRRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHA 360
>Glyma01g07390.1
Length = 407
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 413 GGGSYPNLPWVSTSGSGPNGRTISGVTYRYSSN-QIRIVCACHGTHLTPEEFVRHA 467
G S ++P V T G GPNGR I G+ Y+Y ++RI+C CHG L+P EFV+HA
Sbjct: 331 GTNSMEDMPCVFTKGDGPNGRRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHA 386
>Glyma16g12800.1
Length = 385
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 416 SYPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
S P +P+VST G NGRT++G YRY+ +++ I+C CHG+ +P EFV+HA
Sbjct: 281 SLPPMPYVSTKGD--NGRTVNGFLYRYTKSEVSIICVCHGSTFSPAEFVQHA 330
>Glyma03g20380.1
Length = 354
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 416 SYPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 467
S P +P+V T G NGRT++G YRY+ +++ IVC CHG+ +P EFV+HA
Sbjct: 285 SLPQMPYVFTKGD--NGRTVNGFLYRYTKSEVSIVCVCHGSTFSPAEFVQHA 334