Miyakogusa Predicted Gene

Lj2g3v0561250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0561250.1 Non Chatacterized Hit- tr|F6HHC1|F6HHC1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,64.79,0.000000000000002,Ribonuclease H-like,Ribonuclease H-like
domain; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT,NULL; CAF1,Ri,70725_g.1
         (101 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g31300.1                                                        80   5e-16
Glyma19g38460.1                                                        77   4e-15
Glyma11g18460.1                                                        77   4e-15
Glyma03g35800.1                                                        77   5e-15
Glyma09g34290.1                                                        75   1e-14
Glyma12g09830.1                                                        75   2e-14
Glyma07g03380.1                                                        72   2e-13
Glyma06g06700.1                                                        67   3e-12
Glyma04g06620.2                                                        65   1e-11
Glyma04g06620.1                                                        65   1e-11
Glyma07g02730.2                                                        64   3e-11
Glyma07g02730.1                                                        64   3e-11
Glyma08g23250.2                                                        59   8e-10
Glyma08g23250.1                                                        59   8e-10
Glyma13g39040.1                                                        59   1e-09

>Glyma12g31300.1 
          Length = 309

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           D LNLIQ+GLT SD+  NLP LGT    F+W+FNFRDF+  RDAHA DSI LL  Q IDF
Sbjct: 104 DALNLIQIGLTLSDSNGNLPHLGTAN-RFIWEFNFRDFDVERDAHAPDSIDLLRRQGIDF 162

Query: 75  DLNAVAGL 82
             NA  G+
Sbjct: 163 RRNAAEGV 170


>Glyma19g38460.1 
          Length = 274

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           D L+LIQ+GLT SD A NLP LGT   +F+W+FNFRDF+  RDAHA DS++LL  Q IDF
Sbjct: 72  DRLHLIQIGLTLSDNAGNLPTLGTSN-AFIWEFNFRDFDVVRDAHAHDSVELLRRQGIDF 130

Query: 75  DLNAVAGL 82
           + N   G+
Sbjct: 131 EKNRDFGI 138


>Glyma11g18460.1 
          Length = 284

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           D LNLIQVGLT +DAA NLPDL   G   +W+FNFRDF+ +RDA+A DSI LL  Q IDF
Sbjct: 83  DALNLIQVGLTLTDAAGNLPDLA--GNRSIWEFNFRDFDVARDAYALDSIDLLRRQGIDF 140

Query: 75  DLNAVAGL 82
             NA  G+
Sbjct: 141 ARNATDGV 148


>Glyma03g35800.1 
          Length = 274

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           D L+LIQ+GLT SD A NLP LGT   +F+W+FNF+DF+ +RDAHA DS++LL  Q IDF
Sbjct: 72  DRLHLIQIGLTLSDNAGNLPTLGTSN-AFIWEFNFKDFDVARDAHAHDSVELLRRQGIDF 130

Query: 75  DLNAVAGL 82
           + N   G+
Sbjct: 131 EKNRDFGI 138


>Glyma09g34290.1 
          Length = 139

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 15 DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
          D  +LIQ+GLT SD A NLP LG    +F+W+FNFRDFN +RDAHA DS++LL  Q IDF
Sbjct: 2  DRFHLIQIGLTLSDNAGNLPILGNSN-AFIWEFNFRDFNVTRDAHAHDSVELLRRQGIDF 60

Query: 75 DLNAVAGL 82
          + N   G+
Sbjct: 61 EKNRDFGI 68


>Glyma12g09830.1 
          Length = 278

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           D LNLIQVGLT +DAA NLPDL   G   +W+FNFRDF+ +RDA+A DSI LL  Q IDF
Sbjct: 81  DALNLIQVGLTLTDAAGNLPDLA--GNRSIWEFNFRDFDVARDAYAPDSIDLLRRQGIDF 138

Query: 75  DLNAVAGL 82
             N   G+
Sbjct: 139 ARNTADGV 146


>Glyma07g03380.1 
          Length = 175

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 14 RDVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWID 73
          RD L+LIQ+ LT SD A NLP LGT   +F+W+FNFRDF+ +RDAH  D ++LL  Q I 
Sbjct: 29 RDRLHLIQISLTLSDNAGNLPTLGTSN-AFIWEFNFRDFDVARDAHTHDYVELLHCQGIY 87

Query: 74 FDLNAVAGL 82
          F+ N   G+
Sbjct: 88 FEKNHDFGI 96


>Glyma06g06700.1 
          Length = 273

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 2   FKPAEPHNDCNLRD---VLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDA 58
           FK    +N   L+D   +L LIQ+GLT SD   NLP  GT   + +WQFNFR+FN S D 
Sbjct: 54  FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTES-TCIWQFNFREFNISEDI 112

Query: 59  HATDSIKLLCHQWIDFDLNAVAGL 82
            A+DSI+LL    IDF  N+  G+
Sbjct: 113 FASDSIELLRQCGIDFKKNSEKGI 136


>Glyma04g06620.2 
          Length = 273

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 2   FKPAEPHNDCNLRD---VLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDA 58
           FK    +N   L+D   +L LIQ+GLT SD   NLP  GT     +WQFNFR+FN S D 
Sbjct: 54  FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPC-IWQFNFREFNVSEDI 112

Query: 59  HATDSIKLLCHQWIDFDLNAVAGL 82
            A+DSI+LL    IDF  N+  G+
Sbjct: 113 FASDSIELLRQCGIDFKKNSENGI 136


>Glyma04g06620.1 
          Length = 273

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 2   FKPAEPHNDCNLRD---VLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDA 58
           FK    +N   L+D   +L LIQ+GLT SD   NLP  GT     +WQFNFR+FN S D 
Sbjct: 54  FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPC-IWQFNFREFNVSEDI 112

Query: 59  HATDSIKLLCHQWIDFDLNAVAGL 82
            A+DSI+LL    IDF  N+  G+
Sbjct: 113 FASDSIELLRQCGIDFKKNSENGI 136


>Glyma07g02730.2 
          Length = 277

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLG-TGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWID 73
           D+L LIQ+GLT SD   NLP  G   G   +WQFNFR+FN + D  A DSI+LL    ID
Sbjct: 71  DMLKLIQLGLTFSDEHGNLPTCGDESGTCCIWQFNFREFNVNEDVFANDSIELLRQSGID 130

Query: 74  FDLNAVAGLTRAFPPAWRIGRL 95
           F  N   G+      A R G L
Sbjct: 131 FKRNNENGI-----DAHRFGEL 147


>Glyma07g02730.1 
          Length = 277

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLG-TGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWID 73
           D+L LIQ+GLT SD   NLP  G   G   +WQFNFR+FN + D  A DSI+LL    ID
Sbjct: 71  DMLKLIQLGLTFSDEHGNLPTCGDESGTCCIWQFNFREFNVNEDVFANDSIELLRQSGID 130

Query: 74  FDLNAVAGLTRAFPPAWRIGRL 95
           F  N   G+      A R G L
Sbjct: 131 FKRNNENGI-----DAHRFGEL 147


>Glyma08g23250.2 
          Length = 281

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLG-----TGGWSFMWQFNFRDFNPSRDAHATDSIKLLCH 69
           D+L LIQ+GLT SD   NLP  G     +     +WQFNFR+FN + D  A DSI+LL  
Sbjct: 71  DMLKLIQLGLTFSDEHGNLPMCGGDDEESDTCCCIWQFNFREFNVNEDVFANDSIELLRQ 130

Query: 70  QWIDFDLNAVAGLTRAFPPAWRIGRL 95
             IDF  N   G+      A R G L
Sbjct: 131 SGIDFKRNNENGI-----DAHRFGEL 151


>Glyma08g23250.1 
          Length = 281

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLG-----TGGWSFMWQFNFRDFNPSRDAHATDSIKLLCH 69
           D+L LIQ+GLT SD   NLP  G     +     +WQFNFR+FN + D  A DSI+LL  
Sbjct: 71  DMLKLIQLGLTFSDEHGNLPMCGGDDEESDTCCCIWQFNFREFNVNEDVFANDSIELLRQ 130

Query: 70  QWIDFDLNAVAGLTRAFPPAWRIGRL 95
             IDF  N   G+      A R G L
Sbjct: 131 SGIDFKRNNENGI-----DAHRFGEL 151


>Glyma13g39040.1 
          Length = 286

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 15  DVLNLIQVGLTPSDAADNLPDLGTGGWSFMWQFNFRDFNPSRDAHATDSIKLLCHQWIDF 74
           D LNLIQVG+T SDA  NLP L TG   F+W+FNFRDF+  RD +A+DSI LL  Q IDF
Sbjct: 81  DALNLIQVGITLSDADGNLPHLETGN-RFIWEFNFRDFDIDRDDYASDSIDLLRRQGIDF 139

Query: 75  DLNAVAGL 82
             N   G+
Sbjct: 140 RRNTAEGI 147